Update test.config

qbic-projects · Jan 24, 2022 · 72e4588 · 72e4588
1 parent ba0854a
commit 72e4588
Showing 1 changed file with 9 additions and 12 deletions.
diff --git a/conf/test.config b/conf/test.config
@@ -3,10 +3,8 @@
     Nextflow config file for running minimal tests
 ========================================================================================
     Defines input files and everything required to run a fast and simple pipeline test.
-
     Use as follows:
         nextflow run nf-core/nanoseq -profile test,<docker/singularity>
-
 ----------------------------------------------------------------------------------------
 */
 
@@ -20,16 +18,15 @@ params {
     max_time   = '6.h'
 
     // Input data to perform both basecalling and demultiplexing
-    input               = 'https://raw.githubusercontent.com/nf-core/test-datasets/nanoseq/samplesheet_bc_dx.csv'
-    protocol            = 'cDNA'
-    flowcell            = 'FLO-MIN106'
-    kit                 = 'SQK-DCS109'
-    barcode_kit         = 'EXP-NBD103'
-    run_nanolyse        = true
-    skip_quantification = true
-    skip_fusion_analysis= true
-    skip_modification_analysis=true
-
+    input                    = 'https://raw.githubusercontent.com/nf-core/test-datasets/nanoseq/samplesheet_bc_dx.csv'
+    protocol                 = 'cDNA'
+    flowcell                 = 'FLO-MIN106'
+    kit                      = 'SQK-DCS109'
+    barcode_kit              = 'EXP-NBD103'
+	output_demultiplex_fast5 = true
+    run_nanolyse             = true
+    skip_quantification      = true
+
     // This variable is just for reference and isnt actually required for the tests
     // Files are downloaded and staged using the "GetTestData" process
     input_path          = 'https://raw.githubusercontent.com/nf-core/test-datasets/nanoseq/fast5/barcoded/'