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QuaDBio Lab

Quantitative Developmental Biology Lab

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  1. scRNAseq_analysis_vignette scRNAseq_analysis_vignette Public

    Tutorial for scRNA-seq data analysis beginners using R

    121 48

  2. Pando Pando Public

    Multiome GRN inference.

    R 106 21

  3. VoxHunt VoxHunt Public

    VoxHunt: Resolving human brain organoid heterogeneity through single-cell genomic comparison to spatial brain maps

    HTML 39 5

  4. scMultiome_analysis_vignette scMultiome_analysis_vignette Public

    Tutorial of single-cell RNA-ATAC multiomic sequencing data analysis

    35 10

  5. primate_cerebral_organoids primate_cerebral_organoids Public

    Reusable scripts and functions archive for the paper "Organoid single-cell genomic atlas uncovers human-specific features of brain development" (https://www.nature.com/articles/s41586-019-1654-9)

    R 33 3

  6. simspec simspec Public

    Calculation of Reference/Cluster Similarity Spectrum (RSS/CSS)

    R 28 3

Repositories

Showing 10 of 20 repositories
  • moscot Public Forked from theislab/moscot

    Multi-omic single-cell optimal transport tools

    quadbio/moscot’s past year of commit activity
    Python 0 BSD-3-Clause 9 0 0 Updated Jul 10, 2024
  • Tangram Public Forked from broadinstitute/Tangram

    Spatial alignment of single cell transcriptomic data.

    quadbio/Tangram’s past year of commit activity
    Jupyter Notebook 0 BSD-3-Clause 47 0 0 Updated Jul 3, 2024
  • scMultiome_analysis_vignette Public

    Tutorial of single-cell RNA-ATAC multiomic sequencing data analysis

    quadbio/scMultiome_analysis_vignette’s past year of commit activity
    35 10 5 0 Updated Apr 22, 2024
  • Pando Public

    Multiome GRN inference.

    quadbio/Pando’s past year of commit activity
    R 106 MIT 21 16 2 Updated Apr 19, 2024
  • scRNAseq_analysis_vignette Public

    Tutorial for scRNA-seq data analysis beginners using R

    quadbio/scRNAseq_analysis_vignette’s past year of commit activity
    121 48 2 0 Updated Apr 18, 2024
  • quadbio/organoid_epigenomics’s past year of commit activity
    R 5 1 0 0 Updated Apr 12, 2024
  • simspec Public

    Calculation of Reference/Cluster Similarity Spectrum (RSS/CSS)

    quadbio/simspec’s past year of commit activity
    R 28 3 3 0 Updated Mar 6, 2024
  • VoxHunt Public

    VoxHunt: Resolving human brain organoid heterogeneity through single-cell genomic comparison to spatial brain maps

    quadbio/VoxHunt’s past year of commit activity
    HTML 39 MIT 5 2 0 Updated Mar 1, 2024
  • quadbio/RNAseq_tutorial’s past year of commit activity
    7 6 0 0 Updated Nov 7, 2023
  • latent-lego Public

    Latent spaces for single cells

    quadbio/latent-lego’s past year of commit activity
    Jupyter Notebook 22 MIT 0 0 0 Updated Oct 31, 2023

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