fu sort

fu-sort

Synopsis

  fu-sort [options] filename (or '-' for STDIN)

Options

  --asc              Print in ascending order (defaul: descending)
  --help             This help
  --version          Print version and exit
  --citation         Print citation for seqfu
  --quiet            No screen output (default OFF)
  --debug            Debug mode: keep all temporary files (default OFF)
Common seqfu options:
  --w|line-width [N] FASTA line size (0 for unlimited) (default '80')
  --strip            Strip comments
  --fasta            Force FASTA output
  --fastq            Force FASTQ output
  --rc               Print reverse complementary
  --q|qual [n.n]     Default quality for FASTQ files (default '32')
  --upper            Convert sequence to uppercase
Sequence comments:
  --cl|add-length    Add length=LEN to the comment