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Releases: quantori/FastqHeat

FastQHeat v1.0.0 (19 Aug 2022)

19 Aug 11:00
@sinitskiy-quantori sinitskiy-quantori
v1.0.0
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Summary

We are happy to present the first version of FastqHeat - the tool intended to facilitate data loading from SRA database or European Nucleotide Archive (ENA).

This is a python wrapper upon fasterq-dump and Aspera Connect tools.

Features

  • Download data from SRA and ENA databases. With transport selected depending on data source.
  • Get metadata for downloaded accessions from ENA Portal API. Also can load just metadata without loading reads.
  • Check downloaded files with hash-sum or line-count methods.
  • Automatic retry of download attempts when the connection is broken.
  • Flexible management of loading parameters, transport etc.
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