Revert "updated to package files for: cuda/mathematica/matlab/py-pycu…

…da/py-scipy"

This reverts commit d980a06.

var/spack/repos/builtin/packages/cuda/package.py

@@ -521,7 +521,6 @@ def cmake_prefix_paths(self):
 
     def setup_run_environment(self, env):
         env.set("CUDA_HOME", self.prefix)
-        env.prepend_path("LD_LIBRARY_PATH", self.prefix.lib64)
 
     def install(self, spec, prefix):
         if os.path.exists("/tmp/cuda-installer.log"):

var/spack/repos/builtin/packages/mathematica/package.py

@@ -38,12 +38,6 @@ class Mathematica(Package):
         expand=False,
     )
 
-    version(
-        "13.1.0",
-        expand=False,
-    )
-
-
     # Licensing
     license_required = True
     license_comment = "#"

var/spack/repos/builtin/packages/matlab/package.py

@@ -72,3 +72,16 @@ def install(self, spec, prefix):
         # Full path required
         input_file = join_path(self.stage.source_path, "spack_installer_input.txt")
         subprocess.call(["./install", "-inputFile", input_file])
+
+    @run_after("install")
+    def post_install(self):
+        # Fix broken link
+        with working_dir(self.spec.prefix.bin.glnxa64):
+            os.unlink("libSDL2.so")
+            os.symlink("libSDL2-2.0.so.0.2.1", "libSDL2.so")
+
+        # Fix to random exceptions when changing display settings
+        # https://www.mathworks.com/matlabcentral/answers/373897-external-monitor-throws-java-exception
+        java_opts = os.path.join(self.spec.prefix.bin.glnxa64, "java.opts")
+        with open(java_opts, "w") as out:
+            out.write("-Dsun.java2d.xrender=false\n")

var/spack/repos/builtin/packages/py-pycuda/package.py

@@ -13,10 +13,8 @@ class PyPycuda(PythonPackage):
     """
 
     homepage = "https://mathema.tician.de/software/pycuda/"
-    git = "https://github.com/inducer/pycuda.git"
     pypi = "pycuda/pycuda-2019.1.2.tar.gz"
 
-    version("main", branch="main")
     version("2021.1", sha256="ab87312d0fc349d9c17294a087bb9615cffcf966ad7b115f5b051008a48dd6ed")
     version("2020.1", sha256="effa3b99b55af67f3afba9b0d1b64b4a0add4dd6a33bdd6786df1aa4cc8761a5")
     version("2019.1.2", sha256="ada56ce98a41f9f95fe18809f38afbae473a5c62d346cfa126a2d5477f24cc8a")

var/spack/repos/builtin/packages/py-scipy/package.py

@@ -56,7 +56,7 @@ class PyScipy(PythonPackage):
     # https://github.com/mesonbuild/meson-python/pull/167
     depends_on("py-build", when="@1.9:", type="build")
 
-    depends_on("[email protected]:", when="@1.10:", type="build")
+    depends_on("[email protected]", when="@1.10:", type="build")
     depends_on("[email protected]:", when="@1.9.2:1.9", type="build")
     depends_on("[email protected]:", when="@1.9.1", type="build")
     depends_on("[email protected]", when="@1.9.0", type="build")