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Add problem setup for cloud collapse at different metallicities #723

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@psharda psharda commented Aug 29, 2024

Description

This PR will add a test problem setup for simulating collapse of molecular cloud at different metallicities with on the fly (metals+dust) chemistry implemented in Microphysics. The chemistry network being used here is general and can be used for other ISM simulations as well. It does not contain cosmic rays and photochemistry; they will be added in a future PR.

Related issues

Will use AMReX-Astro/Microphysics#1642

Checklist

Before this pull request can be reviewed, all of these tasks should be completed. Denote completed tasks with an x inside the square brackets [ ] in the Markdown source below:

  • I have added a description (see above).
  • I have added a link to any related issues see (see above).
  • I have read the Contributing Guide.
  • I have added tests for any new physics that this PR adds to the code.
  • I have tested this PR on my local computer and all tests pass.
  • I have manually triggered the GPU tests with the magic comment /azp run.
  • I have requested a reviewer for this PR.

@psharda psharda added this to the Metal Chemistry milestone Aug 29, 2024
@psharda psharda added enhancement New feature or request priority:high high priority labels Aug 29, 2024
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break;
case 34:
numdens[n - 1] = userData_.primary_species_34;
break;
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Can these be replaced with a macro?

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@psharda psharda Aug 30, 2024

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yeah, but you still need to call the macro 34 times, no? like the way we did it in microphysics...

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Yes

src/problems/MetalChem/metalcloud.cpp Outdated Show resolved Hide resolved
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github-merge-queue bot pushed a commit that referenced this pull request Aug 29, 2024
### Description
Now that we are going to have metal+dust chemistry, redefine the ifdef
to CHEMISTRY

### Related issues
Will be useful for #723 

### Checklist
_Before this pull request can be reviewed, all of these tasks should be
completed. Denote completed tasks with an `x` inside the square brackets
`[ ]` in the Markdown source below:_
- [x] I have added a description (see above).
- [x] I have added a link to any related issues see (see above).
- [x] I have read the [Contributing
Guide](https://github.com/quokka-astro/quokka/blob/development/CONTRIBUTING.md).
- [ ] I have added tests for any new physics that this PR adds to the
code.
- [x] I have tested this PR on my local computer and all tests pass.
- [ ] I have manually triggered the GPU tests with the magic comment
`/azp run`.
- [] I have requested a reviewer for this PR.

---------

Co-authored-by: Piyush Sharda <[email protected]>
github-merge-queue bot pushed a commit that referenced this pull request Aug 29, 2024
### Description
Important updates to microphysics now enables using chemistry at all
metallicities.

### Related issues
Will be used in #723 

### Checklist
_Before this pull request can be reviewed, all of these tasks should be
completed. Denote completed tasks with an `x` inside the square brackets
`[ ]` in the Markdown source below:_
- [x] I have added a description (see above).
- [x] I have added a link to any related issues see (see above).
- [x] I have read the [Contributing
Guide](https://github.com/quokka-astro/quokka/blob/development/CONTRIBUTING.md).
- [ ] I have added tests for any new physics that this PR adds to the
code.
- [x] I have tested this PR on my local computer and all tests pass.
- [x] I have manually triggered the GPU tests with the magic comment
`/azp run`.
- [x] I have requested a reviewer for this PR.

Co-authored-by: Piyush Sharda <[email protected]>
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sonarcloud bot commented Sep 6, 2024

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