Use wrabbit 0.2.1

requirements.txt

@@ -1,6 +1,6 @@
 ruamel.yaml >= 0.16
 sevenbridges-python >= 2.0
 nf-core==2.1
-wrabbit==0.2.0
+wrabbit==0.2.1
 cwlformat
 packaging

sbpack/noncwl/nextflow.py

@@ -46,6 +46,9 @@ def nf_schema_build(self):
         Build nextflow schema using nf_core schema build feature and save to
         a file
         """
+        if self.nf_schema_path:
+            return
+
         nf_schema_path = os.path.join(
             self.workflow_path,
             NF_SCHEMA_DEFAULT_NAME,
@@ -64,6 +67,8 @@ def nf_schema_build(self):
         )
         self.nf_schema_path = nf_schema_path
 
+        self.init_config_files()
+
 
 def main():
     # CLI parameters
@@ -248,13 +253,6 @@ def main():
             schema = yaml.safe_load(s)
             nf_wrapper.sb_wrapper.load(schema)
     else:
-        # build schema
-        # Do this only if the nextflow_schema.json is missing
-        if not nf_wrapper.nf_schema_path:
-            nf_wrapper.nf_schema_build()
-            # update the nextflow_schema.json location
-            nf_wrapper.init_config_files()
-
         # Create app
         nf_wrapper.generate_sb_app(
             execution_mode=execution_mode,