First draft of next final version.

rafalab · Nov 24, 2023 · c89f1f2 · c89f1f2
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diff --git a/.gitignore b/.gitignore
@@ -7,4 +7,6 @@
 copy-qmds.R
 crossref.sh
 /.quarto/
-docs/
+docs/
+Untitled*
+fixsh.R
diff --git a/_quarto.yml b/_quarto.yml
@@ -34,24 +34,24 @@ book:
         - R/R-basics.qmd
         - R/programming-basics.qmd
         - R/tidyverse.qmd
+        - R/data-table.qmd
         - R/importing-data.qmd
-        - R/data_table.qmd
 
     - part:  dataviz/intro-dataviz.qmd
       chapters:
-        - dataviz/ggplot2.qmd
         - dataviz/distributions.qmd
-        - dataviz/gapminder.qmd
+        - dataviz/ggplot2.qmd
         - dataviz/dataviz-principles.qmd
-        - dataviz/vaccines.qmd
-  
+        - dataviz/dataviz-in-practice.qmd
+
     - part: wrangling/intro-to-wrangling.qmd
       chapters:
         - wrangling/reshaping-data.qmd
         - wrangling/joining-tables.qmd
+        - wrangling/dates-and-times.qmd
+        - wrangling/data-table-wrangling.qmd
         - wrangling/web-scraping.qmd
         - wrangling/string-processing.qmd
-        - wrangling/dates-and-times.qmd
         - wrangling/text-mining.qmd
 
     - part: productivity/intro-productivity.qmd

diff --git a/docs/R/R-basics.html b/docs/R/R-basics.html
diff --git a/docs/R/data_table.html b/docs/R/data_table.html
diff --git a/docs/R/getting-started.html b/docs/R/getting-started.html
diff --git a/docs/R/importing-data.html b/docs/R/importing-data.html
diff --git a/docs/R/intro-to-R.html b/docs/R/intro-to-R.html
@@ -133,7 +133,7 @@
           <li class="sidebar-item">
   <div class="sidebar-item-container"> 
   <a href="../R/getting-started.html" class="sidebar-item-text sidebar-link">
- <span class="menu-text"><span class="chapter-number">1</span>&nbsp; <span class="chapter-title">Getting started with R and RStudio</span></span></a>
+ <span class="menu-text"><span class="chapter-number">1</span>&nbsp; <span class="chapter-title">Getting started</span></span></a>
   </div>
 </li>
           <li class="sidebar-item">
@@ -156,14 +156,14 @@
 </li>
           <li class="sidebar-item">
   <div class="sidebar-item-container"> 
-  <a href="../R/importing-data.html" class="sidebar-item-text sidebar-link">
- <span class="menu-text"><span class="chapter-number">5</span>&nbsp; <span class="chapter-title">Importing data</span></span></a>
+  <a href="../R/data-table.html" class="sidebar-item-text sidebar-link">
+ <span class="menu-text"><span class="chapter-number">5</span>&nbsp; <span class="chapter-title">data.table</span></span></a>
   </div>
 </li>
           <li class="sidebar-item">
   <div class="sidebar-item-container"> 
-  <a href="../R/data_table.html" class="sidebar-item-text sidebar-link">
- <span class="menu-text"><span class="chapter-number">6</span>&nbsp; <span class="chapter-title">data.table</span></span></a>
+  <a href="../R/importing-data.html" class="sidebar-item-text sidebar-link">
+ <span class="menu-text"><span class="chapter-number">6</span>&nbsp; <span class="chapter-title">Importing data</span></span></a>
   </div>
 </li>
       </ul>
@@ -179,32 +179,26 @@
       <ul id="quarto-sidebar-section-2" class="collapse list-unstyled sidebar-section depth1 ">  
           <li class="sidebar-item">
   <div class="sidebar-item-container"> 
-  <a href="../dataviz/ggplot2.html" class="sidebar-item-text sidebar-link">
- <span class="menu-text"><span class="chapter-number">7</span>&nbsp; <span class="chapter-title">ggplot2</span></span></a>
-  </div>
-</li>
-          <li class="sidebar-item">
-  <div class="sidebar-item-container"> 
   <a href="../dataviz/distributions.html" class="sidebar-item-text sidebar-link">
- <span class="menu-text"><span class="chapter-number">8</span>&nbsp; <span class="chapter-title">Visualizing data distributions</span></span></a>
+ <span class="menu-text"><span class="chapter-number">7</span>&nbsp; <span class="chapter-title">Visualizing data distributions</span></span></a>
   </div>
 </li>
           <li class="sidebar-item">
   <div class="sidebar-item-container"> 
-  <a href="../dataviz/gapminder.html" class="sidebar-item-text sidebar-link">
- <span class="menu-text"><span class="chapter-number">9</span>&nbsp; <span class="chapter-title">Data visualization in practice</span></span></a>
+  <a href="../dataviz/ggplot2.html" class="sidebar-item-text sidebar-link">
+ <span class="menu-text"><span class="chapter-number">8</span>&nbsp; <span class="chapter-title">ggplot2</span></span></a>
   </div>
 </li>
           <li class="sidebar-item">
   <div class="sidebar-item-container"> 
   <a href="../dataviz/dataviz-principles.html" class="sidebar-item-text sidebar-link">
- <span class="menu-text"><span class="chapter-number">10</span>&nbsp; <span class="chapter-title">Data visualization principles</span></span></a>
+ <span class="menu-text"><span class="chapter-number">9</span>&nbsp; <span class="chapter-title">Data visualization principles</span></span></a>
   </div>
 </li>
           <li class="sidebar-item">
   <div class="sidebar-item-container"> 
-  <a href="../dataviz/vaccines.html" class="sidebar-item-text sidebar-link">
- <span class="menu-text"><span class="chapter-number">11</span>&nbsp; <span class="chapter-title">Case study: vaccines and infectious diseases</span></span></a>
+  <a href="../dataviz/dataviz-in-practice.html" class="sidebar-item-text sidebar-link">
+ <span class="menu-text"><span class="chapter-number">10</span>&nbsp; <span class="chapter-title">Data visualization in practice</span></span></a>
   </div>
 </li>
       </ul>
@@ -221,31 +215,37 @@
           <li class="sidebar-item">
   <div class="sidebar-item-container"> 
   <a href="../wrangling/reshaping-data.html" class="sidebar-item-text sidebar-link">
- <span class="menu-text"><span class="chapter-number">12</span>&nbsp; <span class="chapter-title">Reshaping data</span></span></a>
+ <span class="menu-text"><span class="chapter-number">11</span>&nbsp; <span class="chapter-title">Reshaping data</span></span></a>
   </div>
 </li>
           <li class="sidebar-item">
   <div class="sidebar-item-container"> 
   <a href="../wrangling/joining-tables.html" class="sidebar-item-text sidebar-link">
- <span class="menu-text"><span class="chapter-number">13</span>&nbsp; <span class="chapter-title">Joining tables</span></span></a>
+ <span class="menu-text"><span class="chapter-number">12</span>&nbsp; <span class="chapter-title">Joining tables</span></span></a>
   </div>
 </li>
           <li class="sidebar-item">
   <div class="sidebar-item-container"> 
-  <a href="../wrangling/web-scraping.html" class="sidebar-item-text sidebar-link">
- <span class="menu-text"><span class="chapter-number">14</span>&nbsp; <span class="chapter-title">Web scraping</span></span></a>
+  <a href="../wrangling/dates-and-times.html" class="sidebar-item-text sidebar-link">
+ <span class="menu-text"><span class="chapter-number">13</span>&nbsp; <span class="chapter-title">Parsing dates and times</span></span></a>
   </div>
 </li>
           <li class="sidebar-item">
   <div class="sidebar-item-container"> 
-  <a href="../wrangling/string-processing.html" class="sidebar-item-text sidebar-link">
- <span class="menu-text"><span class="chapter-number">15</span>&nbsp; <span class="chapter-title">String processing</span></span></a>
+  <a href="../wrangling/data-table-wrangling.html" class="sidebar-item-text sidebar-link">
+ <span class="menu-text"><span class="chapter-number">14</span>&nbsp; <span class="chapter-title">Wrangling with <code>data.table</code></span></span></a>
   </div>
 </li>
           <li class="sidebar-item">
   <div class="sidebar-item-container"> 
-  <a href="../wrangling/dates-and-times.html" class="sidebar-item-text sidebar-link">
- <span class="menu-text"><span class="chapter-number">16</span>&nbsp; <span class="chapter-title">Parsing dates and times</span></span></a>
+  <a href="../wrangling/web-scraping.html" class="sidebar-item-text sidebar-link">
+ <span class="menu-text"><span class="chapter-number">15</span>&nbsp; <span class="chapter-title">Web scraping</span></span></a>
+  </div>
+</li>
+          <li class="sidebar-item">
+  <div class="sidebar-item-container"> 
+  <a href="../wrangling/string-processing.html" class="sidebar-item-text sidebar-link">
+ <span class="menu-text"><span class="chapter-number">16</span>&nbsp; <span class="chapter-title">String processing</span></span></a>
   </div>
 </li>
           <li class="sidebar-item">
@@ -292,7 +292,7 @@
           <li class="sidebar-item">
   <div class="sidebar-item-container"> 
   <a href="../productivity/reproducible-projects.html" class="sidebar-item-text sidebar-link">
- <span class="menu-text"><span class="chapter-number">22</span>&nbsp; <span class="chapter-title">Reproducible projects with markdown</span></span></a>
+ <span class="menu-text"><span class="chapter-number">22</span>&nbsp; <span class="chapter-title">Reproducible projects</span></span></a>
   </div>
 </li>
       </ul>
@@ -578,7 +578,7 @@ <h1 class="title">R</h1>
   </div>
   <div class="nav-page nav-page-next">
       <a href="../R/getting-started.html" class="pagination-link">
-        <span class="nav-page-text"><span class="chapter-number">1</span>&nbsp; <span class="chapter-title">Getting started with R and RStudio</span></span> <i class="bi bi-arrow-right-short"></i>
+        <span class="nav-page-text"><span class="chapter-number">1</span>&nbsp; <span class="chapter-title">Getting started</span></span> <i class="bi bi-arrow-right-short"></i>
       </a>
   </div>
 </nav>