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1. demultiplexer_for_DADA2 demultiplexer_for_DADA2 Public template

   If you want to use DADA2 with libraries created with banzai (github.com/jimmyodonnell/banzai) you need to demultiplex samples before

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2. eDNA_functions eDNA_functions Public

   A series of R functions that come in handy while working with metabarcoding data

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3. eDNA.and.Ocean.Acidification.Gallego.et.al.2020 eDNA.and.Ocean.Acidification.Gallego.et.al.2020 Public template

   Data and scripts needed to process the output of the demultiplexer for dada2 for the 7 MiSeq runs used in the manuscript by Gallego et al, 2020

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4. Nextera_Dada2 Nextera_Dada2 Public

   A wrapper around the process needed to process MiSeq reads with Dada2 when the libraries have been made with Nextera adapters

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5. demultiplexer_nanopore demultiplexer_nanopore Public

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6. runQC runQC Public

   Set of R scripts to analyze the banzai output. It will show the missing samples, unexpected barcodes and other graphs

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