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feat(snakemake): upgrade to Snakemake 8.27.1 #1127

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Run time

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Job	Run time
docs-sphinx	5m 53s
lint-commitlint	13s
lint-check-manifest	12s
lint-black	13s
lint-flake8	5s
lint-pydocstyle	5s
lint-shellcheck	5s
python-tests (3.8)	1m 32s
python-tests (3.9)	1m 28s
python-tests (3.10)	1m 26s
python-tests (3.11)	5m 57s
python-tests (3.12)	6m 20s
python-tests (3.13)	5m 35s
	29m 4s