Usage instructions updated (-dist_export)

refresh-bio · Feb 21, 2020 · 54ead66 · 54ead66
1 parent bc4dbcd
commit 54ead66
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diff --git a/famsa_cpu/famsa_cpu.cpp b/famsa_cpu/famsa_cpu.cpp
@@ -110,6 +110,7 @@ void show_usage()
 
 	cout << "  -gt_import <file_name> - import guide tree in Newick format\n";
 	cout << "  -gt_export <file_name> - export guide tree to Newick format\n";
+	cout << "  -dist_export <file_name> -export distance matrix to CSV file; works only in UPGMA mode(-gt upgma)\n";
 
 #ifdef DEVELOPER_MODE
 	cout << "  -ref <file_name> - load referential sequences (for benchmarks) and calculate the minimal subtree size containing them\n";

diff --git a/famsa_gpu/famsa_gpu.cpp b/famsa_gpu/famsa_gpu.cpp
@@ -110,6 +110,7 @@ void show_usage()
 
 	cout << "  -gt_import <file_name> - import guide tree in Newick format\n";
 	cout << "  -gt_export <file_name> - export guide tree to Newick format\n";
+	cout << "  -dist_export <file_name> -export distance matrix to CSV file; works only in UPGMA mode(-gt upgma)\n";
 
 #ifdef DEVELOPER_MODE
 	cout << "  -ref <file_name> - load referential sequences (for benchmarks) and calculate the minimal subtree size containing them\n";

diff --git a/famsa_gpu/famsa_gpu.vcxproj b/famsa_gpu/famsa_gpu.vcxproj
@@ -109,6 +109,7 @@
     <Link>
       <SubSystem>Console</SubSystem>
       <GenerateDebugInformation>true</GenerateDebugInformation>
+      <OutputFile>$(OutDir)famsa-gpu$(TargetExt)</OutputFile>
     </Link>
   </ItemDefinitionGroup>
   <ItemDefinitionGroup Condition="'$(Configuration)|$(Platform)'=='Release|Win32'">
@@ -147,6 +148,7 @@
       <GenerateDebugInformation>true</GenerateDebugInformation>
       <EnableCOMDATFolding>true</EnableCOMDATFolding>
       <OptimizeReferences>true</OptimizeReferences>
+      <OutputFile>$(OutDir)famsa-gpu$(TargetExt)</OutputFile>
     </Link>
   </ItemDefinitionGroup>
   <ItemGroup>