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| Original file line number | Diff line number | Diff line change |
|---|---|---|
| @@ -1,33 +1,28 @@ | ||
| FROM nvidia/cuda:10.0-cudnn7-devel-ubuntu16.04 | ||
| RUN echo "deb-src http://archive.ubuntu.com/ubuntu/ xenial main" | tee -a /etc/apt/sources.list | ||
| RUN apt-get update && apt-get install -y --no-install-recommends \ | ||
| build-essential \ | ||
| cmake \ | ||
| git \ | ||
| curl \ | ||
| vim \ | ||
| ca-certificates \ | ||
| libjpeg-dev \ | ||
| libpng-dev &&\ | ||
| rm -rf /var/lib/apy/lists/* | ||
| # FROM python:3.6.8-jessie | ||
| FROM pytorch/pytorch:1.1.0-cuda10.0-cudnn7.5-runtime | ||
| ENV LC_ALL=C.UTF-8 | ||
| ENV LANG=C.UTF-8 | ||
|
|
||
| RUN curl -o ~/miniconda.sh -O https://repo.continuum.io/miniconda/Miniconda3-latest-Linux-x86_64.sh && \ | ||
| chmod +x ~/miniconda.sh && \ | ||
| ~/miniconda.sh -b -p /opt/conda && \ | ||
| rm ~/miniconda.sh && \ | ||
| /opt/conda/bin/conda install -y python=$PYTHON_VERSION numpy pyyaml scipy ipython mkl mkl-include cython typing && \ | ||
| /opt/conda/bin/conda install -y -c pytorch magma-cuda100 && \ | ||
| /opt/conda/bin/conda clean -ya | ||
| ENV PATH /opt/conda/bin:$PATH | ||
| ENV PATH /usr/local/nvidia/bin/:$PATH | ||
| ENV LD_LIBRARY_PATH /usr/local/nvidia/lib:/usr/local/nvidia/lib64 | ||
|
|
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| # Tell nvidia-docker the driver spec that we need as well as to | ||
| # use all available devices, which are mounted at /usr/local/nvidia. | ||
| # The LABEL supports an older version of nvidia-docker, the env | ||
| # variables a newer one. | ||
| ENV NVIDIA_VISIBLE_DEVICES all | ||
| ENV NVIDIA_DRIVER_CAPABILITIES compute,utility | ||
| LABEL com.nvidia.volumes.needed="nvidia_driver" | ||
|
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||
| WORKDIR /workspace | ||
| RUN chmod -R a+w /workspace | ||
|
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| COPY requirements.txt . | ||
| RUN pip install --upgrade pip | ||
| RUN pip install -r requirements.txt | ||
|
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| COPY experiments/ experiments/ | ||
| COPY kglm/ kglm/ | ||
| COPY .pylintrc .pylintrc | ||
| COPY pytest.ini pytest.ini | ||
| COPY README.md README.md | ||
| COPY requirements.txt . | ||
|
|
||
| RUN pip install -r requirements.txt | ||
| RUN chmod -R a+w /workspace | ||
| COPY kglm/ kglm/ | ||
| COPY experiments/ experiments/ |
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| Original file line number | Diff line number | Diff line change |
|---|---|---|
| @@ -0,0 +1,17 @@ | ||
| { | ||
| "vocabulary": { | ||
| "type": "extended", | ||
| "max_vocab_size": {"tokens": 10000} | ||
| }, | ||
| "datasets_for_vocab_creation": ["train"], | ||
| "dataset_reader": { | ||
| "type": "conll2012_jsonl", | ||
| "token_indexers": { | ||
| "tokens": { | ||
| "type": "single_id", | ||
| "lowercase_tokens": false | ||
| } | ||
| } | ||
| }, | ||
| "train_data_path": "data/conll-2012/processed/train.jsonl", | ||
| } |
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| Original file line number | Diff line number | Diff line change |
|---|---|---|
| @@ -0,0 +1,64 @@ | ||
| { | ||
| "vocabulary": { | ||
| "type": "extended", | ||
| "extend": false, | ||
| "directory_path": "/kermit/rlogan/entity-nlm/data/vocabulary" | ||
| }, | ||
| "dataset_reader": { | ||
| "type": "conll2012_jsonl", | ||
| }, | ||
| "train_data_path": "/kermit/rlogan/entity-nlm/data/conll-2012/processed/train.jsonl", | ||
| "validation_data_path": "/kermit/rlogan/entity-nlm/data/conll-2012/processed/dev.jsonl", | ||
| "model": { | ||
| "type": "entitydisc", | ||
| "text_field_embedder": { | ||
| "token_embedders": { | ||
| "tokens": { | ||
| "type": "embedding", | ||
| "embedding_dim": 256, | ||
| "trainable": true | ||
| }, | ||
| }, | ||
| }, | ||
| "embedding_dim": 256, | ||
| "hidden_size": 256, | ||
| "num_layers": 1, | ||
| "max_mention_length": 100, | ||
| "max_embeddings": 100, | ||
| "dropout_rate": 0.4, | ||
| "variational_dropout_rate": 0.1 | ||
| }, | ||
| "iterator": { | ||
| "type": "fancy", | ||
| "batch_size": 343, | ||
| "split_size": 30, | ||
| "splitting_keys": [ | ||
| "source", | ||
| "entity_types", | ||
| "entity_ids", | ||
| "mention_lengths" | ||
| ], | ||
| }, | ||
| "validation_iterator": { | ||
| "type": "fancy", | ||
| "batch_size": 343, | ||
| "split_size": 128, | ||
| "splitting_keys": [ | ||
| "source", | ||
| "entity_types", | ||
| "entity_ids", | ||
| "mention_lengths" | ||
| ], | ||
| "truncate": false | ||
| }, | ||
| "trainer": { | ||
| "type": "lm", | ||
| "num_epochs": 400, | ||
| "cuda_device": 0, | ||
| "optimizer": { | ||
| "type": "adam", | ||
| "lr": 1e-3 | ||
| }, | ||
| "validation_metric": "+eid_acc" | ||
| } | ||
| } |
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| Original file line number | Diff line number | Diff line change |
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@@ -53,7 +53,7 @@ | |
| "num_epochs": 750, | ||
| "optimizer": { | ||
| "type": "adam", | ||
| "lr": 0.0003 | ||
| "lr": 0.0001 | ||
| } | ||
| }, | ||
| "vocabulary": { | ||
|
|
||
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