Scripts for Biol 633 course
Perl script #1 - separateFiles.pl is used to parse SNP genotyping files. The file uses a list of SNP ID's or individual ID's to bin a genotyping file into keep and toss. After downloading the script either update permissions to make it executable or use perl ./separateFiles.pl. To use: $ perl ./separateFiles.pl inputlistfile snpCallFile
Shell script (squareToLinearMatrix_sampleData.sh) facilitates generating a tidy matrix from a square matrix.