Merge pull request #55 from rnabioco/checks

Checks

R/geom-point-trace.R

@@ -37,31 +37,6 @@
 #'   geom_point_trace() +
 #'   ggplot2::theme_minimal()
 #'
-#' # Modify point color for each group
-#' ggplot2::ggplot(
-#'   clusters,
-#'   ggplot2::aes(UMAP_1, UMAP_2, fill = cluster)
-#' ) +
-#'   geom_point_trace() +
-#'   ggplot2::theme_minimal()
-#'
-#' # Outline groups when coloring by a continuous variable
-#' ggplot2::ggplot(
-#'   clusters,
-#'   ggplot2::aes(UMAP_1, UMAP_2, fill = signal, group = cluster)
-#' ) +
-#'   geom_point_trace(stroke = 0.5) +
-#'   ggplot2::scale_fill_gradientn(colours = c("white", "red")) +
-#'   ggplot2::theme_minimal()
-#'
-#' # Only outline bottom points
-#' ggplot2::ggplot(
-#'   clusters,
-#'   ggplot2::aes(UMAP_1, UMAP_2, fill = cluster)
-#' ) +
-#'   geom_point_trace(trace_position = "bottom") +
-#'   ggplot2::theme_minimal()
-#'
 #' # Outline a subset of points
 #' ggplot2::ggplot(
 #'   clusters,
@@ -81,18 +56,6 @@
 #'   ) +
 #'   ggplot2::theme_minimal()
 #'
-#' # Remove outline
-#' ggplot2::ggplot(
-#'   clusters,
-#'   ggplot2::aes(UMAP_1, UMAP_2, fill = cluster)
-#' ) +
-#'   geom_point_trace(
-#'     trace_position    = signal < 0 | signal > 17,
-#'     background_params = list(color = NA, fill = "grey85"),
-#'     color             = NA
-#'   ) +
-#'   ggplot2::theme_minimal()
-#'
 #' @export
 geom_point_trace <- function(mapping = NULL, data = NULL, stat = "identity",
                              position = "identity", ...,

README.Rmd

@@ -18,7 +18,7 @@ knitr::opts_chunk$set(
 
 <!-- badges: start -->
 [![R-CMD-check](https://github.com/rnabioco/ggtrace/actions/workflows/R-CMD-check.yaml/badge.svg)](https://github.com/rnabioco/ggtrace/actions/workflows/R-CMD-check.yaml)
-[![Codecov test coverage](https://codecov.io/gh/rnabioco/ggtrace/branch/master/graph/badge.svg)](https://codecov.io/gh/rnabioco/ggtrace?branch=master)
+[![Codecov test coverage](https://codecov.io/gh/rnabioco/ggtrace/branch/master/graph/badge.svg)](https://app.codecov.io/gh/rnabioco/ggtrace?branch=master)
 <!-- badges: end -->
 
 ggtrace provides ggplot2 geoms that allow groups of data points to be outlined

README.md

@@ -7,7 +7,7 @@
 
 [![R-CMD-check](https://github.com/rnabioco/ggtrace/actions/workflows/R-CMD-check.yaml/badge.svg)](https://github.com/rnabioco/ggtrace/actions/workflows/R-CMD-check.yaml)
 [![Codecov test
-coverage](https://codecov.io/gh/rnabioco/ggtrace/branch/master/graph/badge.svg)](https://codecov.io/gh/rnabioco/ggtrace?branch=master)
+coverage](https://codecov.io/gh/rnabioco/ggtrace/branch/master/graph/badge.svg)](https://app.codecov.io/gh/rnabioco/ggtrace?branch=master)
 <!-- badges: end -->
 
 ggtrace provides ggplot2 geoms that allow groups of data points to be