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@rnajena

RNA Bioinformatics and High-Throughput Analysis Jena

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  1. bertax bertax Public

    Taxonomic classification of DNA sequences

    Python 50 8

  2. poseidon poseidon Public

    PoSeiDon: positive selection detection and recombination analysis pipeline

    C 36 9

  3. vidhop vidhop Public

    VIDHOP is a virus host predicting tool. Its able to predict influenza A virus, rabies lyssavirus and rotavirus A.

    Python 19 8

  4. EpiDope EpiDope Public

    Prediction of B-cell epitopes from amino acid sequences using deep neural networks.

    Python 16 6

  5. viralclust viralclust Public

    Small pipeline to cluster viral genomes based on their k-mer content. WiP

    Nextflow 16 5

  6. bertax_training bertax_training Public

    Training scripts for BERTax

    Python 9 5

Repositories

Showing 10 of 23 repositories
  • sugar Public

    S*R -- A Python framework for bioinformatics

    rnajena/sugar’s past year of commit activity
    Python 2 0 0 0 Updated Feb 19, 2025
  • dynamont Public
    rnajena/dynamont’s past year of commit activity
    C++ 1 GPL-3.0 1 0 0 Updated Feb 18, 2025
  • anchorna Public

    Find anchors in RNA/DNA sequences

    rnajena/anchorna’s past year of commit activity
    Python 2 0 0 0 Updated Feb 14, 2025
  • viralclust Public

    Small pipeline to cluster viral genomes based on their k-mer content. WiP

    rnajena/viralclust’s past year of commit activity
    Nextflow 16 GPL-3.0 5 7 0 Updated Feb 6, 2025
  • RNAswarm Public

    RNAswarm is a nextflow pipeline for differential RNA-RNA interaction analysis using RNA cross-linking methodologies

    rnajena/RNAswarm’s past year of commit activity
    Python 2 MIT 1 2 0 Updated Jan 3, 2025
  • diffONT Public

    diffONT is a python-based tool for predicting methylation-specific PCR (MSP) primers, based on Nanopore sequencing data. Given mutliple bedmethyl files, diffONT detects methylation specific PCR primer regions, which can distinguish between two groups of samples (originally cancer patients vs. healthy controls).

    rnajena/diffONT’s past year of commit activity
    Python 0 MIT 0 0 0 Updated Dec 17, 2024
  • read5_ont Public

    Wrapper to read fast5 and pod5 files.

    rnajena/read5_ont’s past year of commit activity
    Python 0 GPL-3.0 1 0 0 Updated Nov 27, 2024
  • read5 Public

    Wrapper to read fast5, slow5, blow5 and pod5 files.

    rnajena/read5’s past year of commit activity
    Python 9 GPL-3.0 1 1 0 Updated Nov 27, 2024
  • poseidon Public

    PoSeiDon: positive selection detection and recombination analysis pipeline

    rnajena/poseidon’s past year of commit activity
    C 36 MIT 9 9 (1 issue needs help) 0 Updated Oct 28, 2024
  • pcago-unified Public

    PCAGO is an interactive web service that allows analysis of RNA-Seq read count data with principal component analysis (PCA) and agglomerative clustering. The tool also includes features like read count normalization, filtering read counts by gene annotation and various visualization options.

    rnajena/pcago-unified’s past year of commit activity
    R 1 3 1 0 Updated Sep 18, 2024
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