Timeseries reports work with Birkhoff

[robfalck]

Summary

• Refactored timeseries report so that it doesn't need a Problem instance.
• Moved time, state, parameter, and control options into actual Phase.options so that they are recorded.
• Removed phase instantiation using from_phase argument.
• Added Phase.duplicate() method.
• Added some tex files that were missing from the JOSS folder.
• Cleanup .gitignore.

Related Issues

• Resolves Trajectory results report is empty for Birkhoff transcription. OpenMDAO/dymos#1039

Backwards incompatibilities

• Phase init argument from_phase is no longer availalbe. Users should use Phase.duplicate() or Phase.get_simulation_phase()

New Dependencies

None

[coveralls]

Pull Request Test Coverage Report for Build 7747185958

• -51 of 265 (80.75%) changed or added relevant lines in 7 files are covered.
• No unchanged relevant lines lost coverage.
• Overall coverage increased (+0.6%) to 92.759%

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Changes Missing Coverage	Covered Lines	Changed/Added Lines	%
dymos/phase/simulation_phase.py	11	14	78.57%
dymos/visualization/timeseries/bokeh_timeseries_report.py	79	83	95.18%
dymos/phase/analytic_phase.py	20	25	80.0%
dymos/phase/phase.py	84	123	68.29%

Totals
Change from base Build 7741681294:	0.6%
Covered Lines:	34995
Relevant Lines:	37727

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💛 - Coveralls