A quality control tool for high throughput sequence data coming from fasta files
FastC aims to provide a simple way to do some quality control checks on treated sequence data. It is similar to FastQC allowing a comparative study between raw and processed data.
Copyright (C) 2007 Free Software Foundation
FastC aims to provide a simple way to do some quality control checks on treated sequence data coming from high throughput sequencing pipelines. It provides a modular set of analyses which you can use to give a quick impression of whether your data has any problems. It is similar to FastQC allowing a comparative study between raw and processed data.
The main functions of FastC are
1) Import of data from Fasta file
2) Summary graphs and tables to quickly assess your data
3) Output PDF report
Linux
32 and 64 bits
You need to have gnuplot, imagemagick and to update glibc to 2.14
sudo git clone https://github.com/rodriguez-salarichs/FastC
cd FastC
tar -xzvf FastC.tar.gz
cd FastC
sudo ./INSTALL [ By default, FastC and its binary are installed at /usr/local and /usr/bin respectively ]
sudo ./INSTALL [Options]
OPTIONS:
--prefix=/DESTINATION/DIRECTORY
--bindir=DIR user executable [/usr/bin]
--help Print this help file and exit
You can find an example input file at /DESTINATION/DIRECTORY/FastC/example