Merge pull request #18 from rpahl/update_pages

Update pages

DESCRIPTION

@@ -1,6 +1,6 @@
 Package: GroupSeq
 Title: Group Sequential Design Probabilities - With Graphical User Interface
-Version: 1.4.3
+Version: 1.4.4
 Authors@R:
     person("Roman", "Pahl",
     email = "[email protected]", role = c("aut", "cre"))
@@ -16,7 +16,7 @@ Imports:
 Suggests: knitr, tinytest, rmarkdown, ggplot2, gridExtra
 VignetteBuilder: knitr
 License: GPL-3
-URL: https://rpahl.github.io/GroupSeq/
+URL: https://rpahl.github.io/GroupSeq/, https://github.com/rpahl/GroupSeq
 BugReports: https://github.com/rpahl/GroupSeq/issues
 NeedsCompilation: no
 Author: Roman Pahl [aut, cre]

README.Rmd

@@ -26,17 +26,17 @@ old <- options(width = 100L, digits = 10)
 
 
 <!-- badges: start -->
-[![CRAN_Status_Badge](https://www.r-pkg.org/badges/version/GroupSeq)](https://cran.r-project.org/package=GroupSeq)
-[![R-CMD-check](https://github.com/rpahl/GroupSeq/actions/workflows/check-standard.yaml/badge.svg)](https://github.com/rpahl/GroupSeq/actions/workflows/check-standard.yaml)
-[![dependencies](https://tinyverse.netlify.com/badge/GroupSeq)](https://CRAN.R-project.org/package=GroupSeq)
-[![Lifecycle_Badge](https://img.shields.io/badge/lifecycle-stable-green.svg)](https://cran.r-project.org/package=GroupSeq)
-[![downloads](https://cranlogs.r-pkg.org/badges/GroupSeq?color=3aa9e8)](https://www.r-pkg.org:443/pkg/GroupSeq)
-[![total-downloads](http://cranlogs.r-pkg.org/badges/grand-total/GroupSeq)](https://cran.r-project.org/package=GroupSeq)
-[![last-commit](https://img.shields.io/github/last-commit/rpahl/GroupSeq)](https://cran.r-project.org/package=GroupSeq)
-
+[![CRAN release](https://www.r-pkg.org/badges/version/GroupSeq)](https://cran.r-project.org/package=GroupSeq)
+[![Dependencies](https://tinyverse.netlify.app/badge/GroupSeq)](https://CRAN.R-project.org/package=GroupSeq)
+[![R-CMD-check status](https://github.com/rpahl/GroupSeq/workflows/R-CMD-check/badge.svg)](https://github.com/rpahl/GroupSeq/actions)
+[![CRAN checks](https://badges.cranchecks.info/summary/GroupSeq.svg)](https://cran.r-project.org/web/checks/check_results_container.html)
+[![Downloads per month](http://cranlogs.r-pkg.org/badges/last-month/GroupSeq)](https://cran.r-project.org/package=GroupSeq)
+[![Downloads total](http://cranlogs.r-pkg.org/badges/grand-total/GroupSeq)](https://cran.r-project.org/package=GroupSeq)
+[![Last commit](https://img.shields.io/github/last-commit/rpahl/GroupSeq.svg)](https://github.com/rpahl/GroupSeq/commits/master)
+[![Lifecycle status](https://img.shields.io/badge/lifecycle-stable-brightgreen.svg)](https://lifecycle.r-lib.org/articles/stages.html#stable)
 <!-- badges: end -->
 
-# GroupSeq <img src="man/figures/logo3D.png" align="right" width="200" height="250"/>
+# GroupSeq <img src="man/figures/logo3D.png" alt="logo" align="right" width="200" height="250"/>
 
 GroupSeq computes probabilities related to group sequential designs for normally
 distributed test statistics. It enables to derive critical boundaries, power,
@@ -66,7 +66,7 @@ Load the library to start the graphical user interface.
 library("GroupSeq")
 ```
 
-```{r, out.width = "30%", echo = FALSE}
+```{r, out.width = "30%", echo = FALSE, fig.alt = "menu-after-load"}
 include_graphics("man/figures/menu-after-load.png")
 ```
 
@@ -93,9 +93,6 @@ statistical functionality:
     [vignettes](https://www.rpact.com/vignettes).
 
 
-### References {#refs}
-
-<div id="refs"></div>
 
 ---
 

README.md

@@ -1,24 +1,32 @@
 
 <!-- README.md is generated from README.Rmd. Please edit that file -->
-<!-- badges: start -->
 
-[![CRAN_Status_Badge](https://www.r-pkg.org/badges/version/GroupSeq)](https://cran.r-project.org/package=GroupSeq)
-[![R-CMD-check](https://github.com/rpahl/GroupSeq/actions/workflows/check-standard.yaml/badge.svg)](https://github.com/rpahl/GroupSeq/actions/workflows/check-standard.yaml)
-[![dependencies](https://tinyverse.netlify.com/badge/GroupSeq)](https://CRAN.R-project.org/package=GroupSeq)
-[![Lifecycle_Badge](https://img.shields.io/badge/lifecycle-stable-green.svg)](https://cran.r-project.org/package=GroupSeq)
-[![downloads](https://cranlogs.r-pkg.org/badges/GroupSeq?color=3aa9e8)](https://www.r-pkg.org:443/pkg/GroupSeq)
-[![total-downloads](http://cranlogs.r-pkg.org/badges/grand-total/GroupSeq)](https://cran.r-project.org/package=GroupSeq)
-[![last-commit](https://img.shields.io/github/last-commit/rpahl/GroupSeq)](https://cran.r-project.org/package=GroupSeq)
+<!-- badges: start -->
 
+[![CRAN
+release](https://www.r-pkg.org/badges/version/GroupSeq)](https://cran.r-project.org/package=GroupSeq)
+[![Dependencies](https://tinyverse.netlify.app/badge/GroupSeq)](https://CRAN.R-project.org/package=GroupSeq)
+[![R-CMD-check
+status](https://github.com/rpahl/GroupSeq/workflows/R-CMD-check/badge.svg)](https://github.com/rpahl/GroupSeq/actions)
+[![CRAN
+checks](https://badges.cranchecks.info/summary/GroupSeq.svg)](https://cran.r-project.org/web/checks/check_results_container.html)
+[![Downloads per
+month](http://cranlogs.r-pkg.org/badges/last-month/GroupSeq)](https://cran.r-project.org/package=GroupSeq)
+[![Downloads
+total](http://cranlogs.r-pkg.org/badges/grand-total/GroupSeq)](https://cran.r-project.org/package=GroupSeq)
+[![Last
+commit](https://img.shields.io/github/last-commit/rpahl/GroupSeq.svg)](https://github.com/rpahl/GroupSeq/commits/master)
+[![Lifecycle
+status](https://img.shields.io/badge/lifecycle-stable-brightgreen.svg)](https://lifecycle.r-lib.org/articles/stages.html#stable)
 <!-- badges: end -->
 
-# GroupSeq <img src="man/figures/logo3D.png" align="right" width="200" height="250"/>
+# GroupSeq <img src="man/figures/logo3D.png" alt="logo" align="right" width="200" height="250"/>
 
 GroupSeq computes probabilities related to group sequential designs for
 normally distributed test statistics. It enables to derive critical
 boundaries, power, drift, and confidence intervals of such designs,
-mostly using the alpha spending approach of [DeMets and
-Lan](#ref-pmid7973215) ([1994](#ref-pmid7973215)).
+mostly using the alpha spending approach of DeMets and Lan
+([1994](#ref-pmid7973215)).
 
 The main motivation for the development of this package was to make this
 area of statistics freely available for a broad audience, which is one
@@ -43,7 +51,7 @@ Load the library to start the graphical user interface.
 library("GroupSeq")
 ```
 
-<img src="man/figures/menu-after-load.png" width="30%" />
+<img src="man/figures/menu-after-load.png" alt="menu-after-load" width="30%" />
 
 <br>
 
@@ -55,22 +63,26 @@ page.
 
 Since the package was written back in 2005, the graphical user interface
 may appear a bit outdated. Still, it does it’s job and at least has
-stood the test of
-time[![^1](https://latex.codecogs.com/png.image?%5Cdpi%7B110%7D&space;%5Cbg_white&space;%5E1 "^1")](#refs).
-Luckily in recent years others have started to develop R-based tools
-with graphical user interface and similar (and more) statistical
-functionality:
+stood the test of time[$^1$](#refs). Luckily in recent years others have
+started to develop R-based tools with graphical user interface and
+similar (and more) statistical functionality:
 
--   [gsDesign](https://CRAN.R-project.org/package=gsDesign) with a free
-    [shiny web interface](https://gsdesign.shinyapps.io/prod/) including
-    tutorials.
--   [rpact](https://CRAN.R-project.org/package=rpact) also with a free
-    [shiny web interface](https://rpact.shinyapps.io/public) and lots of
-    [vignettes](https://www.rpact.com/vignettes).
+- [gsDesign](https://CRAN.R-project.org/package=gsDesign) with a free
+  [shiny web interface](https://gsdesign.shinyapps.io/prod/) including
+  tutorials.
+- [rpact](https://CRAN.R-project.org/package=rpact) also with a free
+  [shiny web interface](https://rpact.shinyapps.io/public) and lots of
+  [vignettes](https://www.rpact.com/vignettes).
+
+------------------------------------------------------------------------
 
-### References
+1.  The package author is considering to work on a second version with
+    more functionality and a revised user interface in the near future.
+    Feel free to request new features
+    [here](https://github.com/rpahl/GroupSeq/issues).
 
-<div id="refs" class="references csl-bib-body hanging-indent">
+<div id="refs" class="references csl-bib-body hanging-indent"
+entry-spacing="0">
 
 <div id="ref-pmid7973215" class="csl-entry">
 
@@ -81,10 +93,3 @@ analysis: the alpha spending function approach</span>.” *Stat Med* 13
 </div>
 
 </div>
-
-------------------------------------------------------------------------
-
-1.  The package author is considering to work on a second version with
-    more functionality and a revised user interface in the near future.
-    Feel free to request new features
-    [here](https://github.com/rpahl/GroupSeq/issues).

_pkgdown.yml

@@ -2,43 +2,45 @@ url: https://github.com/rpahl/GroupSeq
 
 
 template:
-  params:
-    bootswatch: sandstone
+  bootstrap: 5
+  bootswatch: sandstone
 
 authors:
   Roman Pahl:
     href: https://rpahl.github.io/r-some-blog/about.html
 
-
-articles:
-  - title: "Overview"
-    contents:
-    - "understanding-gs-designs"
-    - "GroupSeq"
-    - "task-1-compute-bounds-H0"
-    - "task-2-compute-drift"
-    - "task-3-compute-bounds-H1"
-    - "task-4-compute-CI"
-
 home:
   links:
   - text: Visit my R blog
     href: https://rpahl.github.io/r-some-blog/
 
 navbar:
-  title: "GroupSeq"
-  left:
-    - icon: fa-home fa-lg
+  structure:
+    left: [home, getStarted, changeLog, reference, articles, myPackages]
+    right: [github, stackoverflow, bluesky, blog]
+
+
+  components:
+    home:
+      icon: fa-home fa-lg
       href: index.html
-    - text: "Get started"
+      aria-label: home
+
+    getStarted:
+      text: "Get Started"
       href: articles/GroupSeq.html
-    - text: "Reference"
+
+    reference:
+      text: "Reference"
       href: reference/index.html
-    - text: "Changelog"
+
+    changeLog:
+      text: "Changelog"
       href: news/index.html
-    - text: "Articles"
+
+    articles:
+      text: "Articles"
       menu:
-        - title: "Overview"
         - text: "Overview"
           href: articles/index.html
         - text: "---"
@@ -58,19 +60,30 @@ navbar:
         - text: "Other"
         - text: "GroupSeq article in R News 2006"
           href: "https://www.r-project.org/doc/Rnews/Rnews_2006-2.pdf#page=21"
-    - text: "My Packages"
+
+    myPackages:
+      text: "My Packages"
       menu:
         - text: "container"
           href: https://rpahl.github.io/container/
         - text: "GroupSeq"
           href: https://rpahl.github.io/GroupSeq/
-  right:
-    - icon: fab fa-github
+        - text: "pipeflow"
+          href: https://rpahl.github.io/pipeflow/
+
+    github:
+      icon: fab fa-github
       href: https://github.com/rpahl/GroupSeq/
-    - icon: fab fa-stack-overflow
+      aria-label: github
+    stackoverflow:
+      icon: fab fa-stack-overflow
       href: https://stackoverflow.com/users/8120617/rpahl
-    - icon: fab fa-twitter
-      href: https://twitter.com/romanpahl
-    - icon: fas fa-blog
+      aria-label: stackoverflow
+    bluesky:
+      icon: fab fa-bluesky
+      href: https://bsky.app/profile/rpahl.bsky.social
+      aria-label: bluesky
+    blog:
+      icon: fas fa-blog
       href: https://rpahl.github.io/r-some-blog/
-
+      aria-label: blog