All codes for the master's thesis project can be found in this repository. The scTE output and SpaceRanger output should be ready before excuting the pipeline. The pipeline starts with cell2location, the numbers indicate the order of the pipeline. EMTAB10972: Cerebral organoid data, GSE220442: Post-mortem MTG data
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All the resouces and codes for the master's thesis project can be found in this repository.
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