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Merge pull request #47 from NFDI4Chem/45_revert_import_of_GO-0070206
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new improved PR: delete protein trimerization (GO:0070206) from mop.owl and mop.obo
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@batchelorc
batchelorc authored May 17, 2022
2 parents 3c84124 + 3ee4605 commit a570205
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Showing 2 changed files with 18 additions and 35 deletions.
20 changes: 5 additions & 15 deletions mop.obo
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@@ -1,9 +1,9 @@
format-version: 1.2
data-version: releases/2022-02-01
data-version: releases/2022-05-11
synonymtypedef: FORMULA "FORMULA"
synonymtypedef: IUPAC_NAME "IUPAC NAME"
ontology: mop
property_value: http://purl.org/dc/elements/1.1/date "01:02:2022 11:15" xsd:string
property_value: http://purl.org/dc/elements/1.1/date "11:05:2022 11:15" xsd:string
property_value: http://purl.org/dc/elements/1.1/description "MOP is the molecular process ontology. It contains the molecular processes that underlie the name reaction ontology RXNO, for example cyclization, methylation and demethylation." xsd:string
property_value: http://purl.org/dc/elements/1.1/title "MOP" xsd:string
property_value: http://purl.org/dc/terms/license http://creativecommons.org/licenses/by/4.0/
Expand Down Expand Up @@ -350,19 +350,6 @@ id: CHEBI:73474
name: acetylenic compound
is_a: CHEBI:36357 ! polyatomic entity

[Term]
id: GO:0070206
name: protein trimerization
namespace: biological_process
def: "The formation of a protein trimer, a macromolecular structure consisting of three noncovalently associated identical or nonidentical subunits." []
synonym: "protein trimer assembly" EXACT []
synonym: "protein trimer biosynthesis" EXACT []
synonym: "protein trimer biosynthetic process" EXACT []
synonym: "protein trimer formation" EXACT []
xref: GOC:hjd
is_a: MOP:0000715 ! trimerization
property_value: IAO:0000412 http://purl.obolibrary.org/obo/go/releases/2022-01-13/go.owl xsd:string

[Term]
id: MOP:0000000
name: borylation
Expand Down Expand Up @@ -6081,6 +6068,9 @@ def: "The formation of a trimer from three molecular subunits." [https://en.wikt
is_a: MOP:0000543 ! molecular process
property_value: http://purl.org/dc/elements/1.1/creator http://orcid.org/0000-0002-4378-6061
property_value: http://purl.org/dc/elements/1.1/date 2022-02-01T09:40:48Z xsd:dateTime
property_value: IAO:0000116 "The GO class \"protein trimerization\" (https://purl.obolibrary.org/obo/GO_0070206) would actually be a subclass of \"trimerization\" according to the definition provided here. However, for the reason of not wanting to inject this subclassOf axiom into GO, we decided to not assert this in MOP as of yet. Further discussion is needed with the GO and/or OBO team to see how this GO class can be integrated." xsd:string
property_value: seeAlso https://github.com/rsc-ontologies/rxno/issues/45
property_value: seeAlso "issuecomment-1124151946"

[Term]
id: MOP:0000716
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33 changes: 13 additions & 20 deletions mop.owl
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xmlns:terms="http://purl.org/dc/terms/"
xmlns:oboInOwl="http://www.geneontology.org/formats/oboInOwl#">
<owl:Ontology rdf:about="http://purl.obolibrary.org/obo/mop.owl">
<owl:versionIRI rdf:resource="http://purl.obolibrary.org/obo/mop/releases/2022-02-01/mop.owl"/>
<dc:date>01:02:2022 11:15</dc:date>
<owl:versionIRI rdf:resource="http://purl.obolibrary.org/obo/mop/releases/2022-05-11/mop.owl"/>
<dc:date>11:05:2022 11:15</dc:date>
<dc:description rdf:datatype="http://www.w3.org/2001/XMLSchema#string">MOP is the molecular process ontology. It contains the molecular processes that underlie the name reaction ontology RXNO, for example cyclization, methylation and demethylation.</dc:description>
<dc:title rdf:datatype="http://www.w3.org/2001/XMLSchema#string">MOP</dc:title>
<terms:license rdf:resource="http://creativecommons.org/licenses/by/4.0/"/>
Expand Down Expand Up @@ -41,6 +41,14 @@



<!-- http://purl.obolibrary.org/obo/IAO_0000116 -->

<owl:AnnotationProperty rdf:about="http://purl.obolibrary.org/obo/IAO_0000116">
<rdfs:label>editor note</rdfs:label>
</owl:AnnotationProperty>



<!-- http://purl.obolibrary.org/obo/IAO_0000231 -->

<owl:AnnotationProperty rdf:about="http://purl.obolibrary.org/obo/IAO_0000231"/>
Expand Down Expand Up @@ -1312,24 +1320,6 @@



<!-- http://purl.obolibrary.org/obo/GO_0070206 -->

<owl:Class rdf:about="http://purl.obolibrary.org/obo/GO_0070206">
<rdfs:subClassOf rdf:resource="http://purl.obolibrary.org/obo/MOP_0000715"/>
<obo:IAO_0000115>The formation of a protein trimer, a macromolecular structure consisting of three noncovalently associated identical or nonidentical subunits.</obo:IAO_0000115>
<obo:IAO_0000412 rdf:datatype="http://www.w3.org/2001/XMLSchema#string">http://purl.obolibrary.org/obo/go/releases/2022-01-13/go.owl</obo:IAO_0000412>
<oboInOwl:hasDbXref rdf:datatype="http://www.w3.org/2001/XMLSchema#string">GOC:hjd</oboInOwl:hasDbXref>
<oboInOwl:hasExactSynonym>protein trimer assembly</oboInOwl:hasExactSynonym>
<oboInOwl:hasExactSynonym>protein trimer biosynthesis</oboInOwl:hasExactSynonym>
<oboInOwl:hasExactSynonym>protein trimer biosynthetic process</oboInOwl:hasExactSynonym>
<oboInOwl:hasExactSynonym>protein trimer formation</oboInOwl:hasExactSynonym>
<oboInOwl:hasOBONamespace>biological_process</oboInOwl:hasOBONamespace>
<oboInOwl:id>GO:0070206</oboInOwl:id>
<rdfs:label>protein trimerization</rdfs:label>
</owl:Class>



<!-- http://purl.obolibrary.org/obo/MOP_0000000 -->

<owl:Class rdf:about="http://purl.obolibrary.org/obo/MOP_0000000">
Expand Down Expand Up @@ -15463,10 +15453,13 @@
<owl:Class rdf:about="http://purl.obolibrary.org/obo/MOP_0000715">
<rdfs:subClassOf rdf:resource="http://purl.obolibrary.org/obo/MOP_0000543"/>
<obo:IAO_0000115 rdf:datatype="http://www.w3.org/2001/XMLSchema#string">The formation of a trimer from three molecular subunits.</obo:IAO_0000115>
<obo:IAO_0000116>The GO class &quot;protein trimerization&quot; (https://purl.obolibrary.org/obo/GO_0070206) would actually be a subclass of &quot;trimerization&quot; according to the definition provided here. However, for the reason of not wanting to inject this subclassOf axiom into GO, we decided to not assert this in MOP as of yet. Further discussion is needed with the GO and/or OBO team to see how this GO class can be integrated.</obo:IAO_0000116>
<dc:creator rdf:resource="http://orcid.org/0000-0002-4378-6061"/>
<dc:date rdf:datatype="http://www.w3.org/2001/XMLSchema#dateTime">2022-02-01T09:40:48Z</dc:date>
<oboInOwl:id rdf:datatype="http://www.w3.org/2001/XMLSchema#string">MOP:0000715</oboInOwl:id>
<rdfs:label xml:lang="en">trimerization</rdfs:label>
<rdfs:seeAlso rdf:resource="https://github.com/rsc-ontologies/rxno/issues/45"/>
<rdfs:seeAlso rdf:resource="https://github.com/rsc-ontologies/rxno/pull/46#issuecomment-1124151946"/>
</owl:Class>
<owl:Axiom>
<owl:annotatedSource rdf:resource="http://purl.obolibrary.org/obo/MOP_0000715"/>
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