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29 Open 67 Closed
29 Open 67 Closed
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Issues list

CellChat AttributeError: 'SparseCSRView' object has no attribute 'A' bug Something isn't working help wanted Extra attention is needed
#135 opened Aug 16, 2024 by AmyOlex
@dbdimitrov
1
Support for Calligraphy ? enhancement New feature or request
#134 opened Aug 13, 2024 by divyanshusrivastava
@dbdimitrov
1
Guidelines to choose the best parameters for bivariate analysis using Visium HD data bug Something isn't working help wanted Extra attention is needed
#133 opened Aug 13, 2024 by Rafael-Silva-Oliveira
@dbdimitrov
5
fail in running https://liana-py.readthedocs.io/en/latest/notebooks/misty.html bug Something isn't working help wanted Extra attention is needed
#130 opened Aug 4, 2024 by huiyijiangling
@dbdimitrov
1
Plot SVGs are massive in size due to color legend bug Something isn't working help wanted Extra attention is needed
#129 opened Aug 1, 2024 by dnjst
@dbdimitrov
2
Batch aware filtering of interactions in lrs_to_views enhancement New feature or request
#128 opened Jul 31, 2024 by demian1
@dbdimitrov
3
Saving Misty model as .pkl enhancement New feature or request
#127 opened Jul 22, 2024 by Zach-Sten
@dbdimitrov
3
Questions about LIANA+ requirement for cell number enhancement New feature or request
#126 opened Jul 19, 2024 by jun-miao113
@dbdimitrov
3
Spatially informed bivariate metrics in tensor cell2cell and MOFA enhancement New feature or request
#123 opened Jun 25, 2024 by Zach-Sten
@dbdimitrov
3
Clarifications Differential analysis vignette help wanted Extra attention is needed
#118 opened Jun 11, 2024 by maximelepetit
@dbdimitrov
1
GeneA_GeneB gene expression level error bug Something isn't working help wanted Extra attention is needed
#115 opened Jun 5, 2024 by alecdavi
@dbdimitrov
2
Volcano plots for differentially expressed signaling pairs enhancement New feature or request
#113 opened May 30, 2024 by Zach-Sten
@dbdimitrov
2
Proper Caching for MetalinksDB & HCOP enhancement New feature or request
#111 opened May 24, 2024 by dbdimitrov
@dbdimitrov
1
Sanity check if liana uses the log normalised values enhancement New feature or request
#104 opened Apr 24, 2024 by ahmetrifaioglu
@dbdimitrov
1
AnnData dtype argument deprecation enhancement New feature or request
#103 opened Apr 19, 2024 by dbdimitrov
@dbdimitrov
Add a tutorial on GPU-accelerated misty enhancement New feature or request
#100 opened Apr 12, 2024 by dbdimitrov
@dbdimitrov
Export Elbow plot from nmf enhancement New feature or request
#99 opened Apr 12, 2024 by dbdimitrov
@dbdimitrov
Flow chart to guide standard LIANA+ workflows enhancement New feature or request
#94 opened Mar 25, 2024 by dbdimitrov
@dbdimitrov
ZeroDivisionError: float division by zero help wanted Extra attention is needed
#93 opened Mar 25, 2024 by anke-king
@dbdimitrov
10
Move Vignettes to Another Repo documentation Improvements or additions to documentation enhancement New feature or request
#90 opened Feb 21, 2024 by dbdimitrov
@dbdimitrov
Frequency Chord diagram and Heatmap in Python enhancement New feature or request
#85 opened Jan 31, 2024 by maximelepetit
@dbdimitrov
10
move LIANA+ plots to matplotlib and seaborn? [User Opinons Welcome] enhancement New feature or request
#83 opened Jan 26, 2024 by dbdimitrov
@dbdimitrov
5
Implement GPU to speed up the CCC caculation in process of rank_aggregate method (CellChat part)? enhancement New feature or request
#78 opened Dec 19, 2023 by xflicsu
@dbdimitrov
1
Should we exclude CellTalkDB from curated resources list? enhancement New feature or request question Further information is requested
#75 opened Nov 28, 2023 by dbdimitrov
@dbdimitrov
4
Additional metadata in results dataframe enhancement New feature or request
#70 opened Nov 8, 2023 by dnjst
@dbdimitrov
2
ProTip! Exclude everything labeled bug with -label:bug.