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secondorder v0.4.1 (alpha)

docs/source/secondorder_screenshot.png

secondorder will graphically simulate the NMR spectra for any number of coupled spin-1/2 nuclei. The simulation requires the chemical shifts for all nuclei, and all J coupling constants. The code has been tested for up to 8 spin-1/2 nuclei, but the only limitations should be computer memory, processing time, and the screenspace required to enter all of the simulation data.

The primary goal of the project is to provide a free, open-source spectrum simulator suitable for educators as well as researchers (although the latter are more likely to have access to proprietary software such as MNova that can perform similar simulations).

A secondary, (overly?)ambitious goal is to provide code and documentation of sufficient quality that it can serve as a tutorial for others on how to simulate NMR spectra. The author is an organic chemist, not an NMR spectroscopist, and is learning the required quantum mechanics "from scratch". I hope to improve my understanding of the quantum mechanical foundation of NMR to the point where I could explain it to another organic chemist.

Installation and Use

The project is alpha and subject to change. The master branch should maintain a functional program. If you're curious, and have a Python 3 installation, you can download the project folders, install the requirements in requirements.txt if necessary, and run main.py from the command line.

TODO

See CHANGELOG.rst for the map towards a version 1.0.

Feedback

I welcome feedback on this project. Feel free to leave an issue on Github, or contact me by email (mylastname at udel dot edu).

Acknowledgements

This project is inspired by Hans Reich's WINDNMR application. secondorder initializes its simulations with the same variables as WINDNMR's defaults, to verify that the simulation is performing correctly.

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