Skip to content

Commit

Permalink
Merge VCF example fixes
Browse files Browse the repository at this point in the history
  • Loading branch information
d-cameron committed Apr 20, 2024
2 parents e7f78fc + 09a3195 commit a0c207d
Show file tree
Hide file tree
Showing 5 changed files with 24 additions and 1 deletion.
2 changes: 1 addition & 1 deletion test/vcf/4.3/failed/failed_body_format_006.vcf
100644 → 100755
Original file line number Diff line number Diff line change
@@ -1,4 +1,4 @@
##fileformat=VCFv4.3
##CauseOfFailure=FORMAT predefined tag GT has missing alleles
#CHROM POS ID REF ALT QUAL FILTER INFO FORMAT HG00096 HG00097
1 100 rs;rsa C T 100 PASS AB=1 GT:DP:GP 0/|1:12:0,0.1,0 0|1:1.000:0.1,1,0.12
1 100 rs;rsa C T 100 PASS AB=1 GT:DP:GP 0/|1:12:0,0.1,0 0|1:1:0.1,1,0.12
Original file line number Diff line number Diff line change
@@ -1,4 +1,5 @@
##fileformat=VCFv4.3
##CauseOfFailure=FORMAT regex failure
#CHROM POS ID REF ALT QUAL FILTER INFO FORMAT HG00096 HG00097
1 100 rs180734498 C T 100 PASS AC=4 GT 0|0 0|1
1 200 rs180734498 C T 100 PASS AC=4 GL -0.13,-0.58,-3.62 -2.45,-0.00,-5.00
Expand Down
5 changes: 5 additions & 0 deletions test/vcf/4.3/failed/failed_body_info_integer_overflow.vcf
Original file line number Diff line number Diff line change
@@ -0,0 +1,5 @@
##fileformat=VCFv4.3
##INFO=<ID=INT,Number=1,Type=Integer,Description="Integer">
##CauseOfFailure=INFO integer overflow
#CHROM POS ID REF ALT QUAL FILTER INFO
1 123 . C T 100 PASS INT=2147483648
12 changes: 12 additions & 0 deletions test/vcf/4.3/failed/failed_body_info_integer_reserved.vcf
Original file line number Diff line number Diff line change
@@ -0,0 +1,12 @@
##fileformat=VCFv4.3
##INFO=<ID=INT,Number=1,Type=Integer,Description="Integer">
##CauseOfFailure=INFO integer reserved value
#CHROM POS ID REF ALT QUAL FILTER INFO
1 1 . C T 100 PASS INT=-2147483648
1 2 . C T 100 PASS INT=-2147483647
1 3 . C T 100 PASS INT=-2147483646
1 4 . C T 100 PASS INT=-2147483645
1 5 . C T 100 PASS INT=-2147483644
1 6 . C T 100 PASS INT=-2147483643
1 7 . C T 100 PASS INT=-2147483642
1 8 . C T 100 PASS INT=-2147483641
5 changes: 5 additions & 0 deletions test/vcf/4.3/failed/failed_body_info_integer_underflow.vcf
Original file line number Diff line number Diff line change
@@ -0,0 +1,5 @@
##fileformat=VCFv4.3
##INFO=<ID=INT,Number=1,Type=Integer,Description="Integer">
##CauseOfFailure=INFO integer overflow
#CHROM POS ID REF ALT QUAL FILTER INFO
1 123 . C T 100 PASS INT=-2147483649

0 comments on commit a0c207d

Please sign in to comment.