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sandpiper-toolchain · Dec 12, 2024 · 41f4a99 · 41f4a99
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diff --git a/.doctrees/environment.pickle b/.doctrees/environment.pickle
diff --git a/.doctrees/guides/10min.doctree b/.doctrees/guides/10min.doctree
diff --git a/.doctrees/guides/examples/computations/preserved_velocities.doctree b/.doctrees/guides/examples/computations/preserved_velocities.doctree
diff --git a/.doctrees/guides/subject_guides/visualization.doctree b/.doctrees/guides/subject_guides/visualization.doctree
diff --git a/.doctrees/index.doctree b/.doctrees/index.doctree
diff --git a/.doctrees/reference/plot/index.doctree b/.doctrees/reference/plot/index.doctree
diff --git a/_downloads/0f305c42b50b0e427bb8dd7a6b302590/document_variableset.py b/_downloads/0f305c42b50b0e427bb8dd7a6b302590/document_variableset.py
@@ -1,8 +1,7 @@
+import matplotlib as mpl
 import matplotlib.pyplot as plt
 import numpy as np
 
-import matplotlib as mpl
-
 import deltametrics as dm
 
 

diff --git a/_downloads/1a1dc2a964f7be5a23a267af64c8218a/preserved_velocities.py b/_downloads/1a1dc2a964f7be5a23a267af64c8218a/preserved_velocities.py
@@ -1,6 +1,7 @@
+import matplotlib.pyplot as plt
 import numpy as np
+
 import deltametrics as dm
-import matplotlib.pyplot as plt
 
 golfcube = dm.sample_data.golf()
 golfcube.stratigraphy_from('eta')

diff --git a/_downloads/21241a6894d7e7036d590ef3bfdede42/sections_into_arbitrary-6.hires.png b/_downloads/21241a6894d7e7036d590ef3bfdede42/sections_into_arbitrary-6.hires.png
diff --git a/_downloads/34d69dac146d286b91f9fb3a95b4dd80/instantiate_mask_directly-1_02.png b/_downloads/34d69dac146d286b91f9fb3a95b4dd80/instantiate_mask_directly-1_02.png
diff --git a/...nloads/3e77a0fd0181ed18e348c836d2924805/connect_to_nonstandard_data-2.hires.png b/...nloads/3e77a0fd0181ed18e348c836d2924805/connect_to_nonstandard_data-2.hires.png
diff --git a/...nloads/54280c01a218e48eb52716551892b5ca/deltametrics-plot-show_histograms-1.png b/...nloads/54280c01a218e48eb52716551892b5ca/deltametrics-plot-show_histograms-1.png
diff --git a/.../89158fe91632d0d0b7f7beb7b7492814/deltametrics-plot-show_histograms-1.hires.png b/.../89158fe91632d0d0b7f7beb7b7492814/deltametrics-plot-show_histograms-1.hires.png
diff --git a/_downloads/a58c9d50e47a892739c7658dccd35dd9/instantiate_mask_directly-1_00.png b/_downloads/a58c9d50e47a892739c7658dccd35dd9/instantiate_mask_directly-1_00.png
diff --git a/...loads/ac353805bd2e4300e33702458e2590c4/instantiate_mask_directly-1_02.hires.png b/...loads/ac353805bd2e4300e33702458e2590c4/instantiate_mask_directly-1_02.hires.png
diff --git a/...loads/d477752b1bbd2b6365a3cbef95f57ff1/instantiate_mask_directly-1_01.hires.png b/...loads/d477752b1bbd2b6365a3cbef95f57ff1/instantiate_mask_directly-1_01.hires.png
diff --git a/_downloads/d969f816c7746aa5a85df1a7d3aaa0a2/instantiate_mask_directly-1_01.png b/_downloads/d969f816c7746aa5a85df1a7d3aaa0a2/instantiate_mask_directly-1_01.png
diff --git a/_downloads/e46fd8ddc51c9d9aecbe305fdb34b386/10min_all_sections_strat.py b/_downloads/e46fd8ddc51c9d9aecbe305fdb34b386/10min_all_sections_strat.py
@@ -1,6 +1,7 @@
-import deltametrics as dm
 import matplotlib.pyplot as plt
 
+import deltametrics as dm
+
 golfcube = dm.sample_data.golf()
 golfcube.stratigraphy_from('eta', dz=0.05)
 golfcube.register_section('demo', dm.section.StrikeSection(distance_idx=10))

diff --git a/_downloads/e86b4de97a52ca0f596a518b87a10bf5/sections_into_arbitrary-6.png b/_downloads/e86b4de97a52ca0f596a518b87a10bf5/sections_into_arbitrary-6.png
diff --git a/...loads/f690bab53188dff30f76218971e63859/instantiate_mask_directly-1_00.hires.png b/...loads/f690bab53188dff30f76218971e63859/instantiate_mask_directly-1_00.hires.png
diff --git a/_downloads/fac5c9d49f9f5ae46fb29e859204ac2e/cover.py b/_downloads/fac5c9d49f9f5ae46fb29e859204ac2e/cover.py
@@ -1,6 +1,7 @@
-import deltametrics as dm
 import matplotlib.pyplot as plt
 
+import deltametrics as dm
+
 
 golfcube = dm.sample_data.golf()
 golfstrat = dm.cube.StratigraphyCube.from_DataCube(

diff --git a/_downloads/fd20a8efe3292987b147318420da4c7c/connect_to_nonstandard_data-2.png b/_downloads/fd20a8efe3292987b147318420da4c7c/connect_to_nonstandard_data-2.png
diff --git a/_images/connect_to_nonstandard_data-2.png b/_images/connect_to_nonstandard_data-2.png
diff --git a/_images/deltametrics-plot-show_histograms-1.png b/_images/deltametrics-plot-show_histograms-1.png
diff --git a/_images/instantiate_mask_directly-1_00.png b/_images/instantiate_mask_directly-1_00.png
diff --git a/_images/instantiate_mask_directly-1_01.png b/_images/instantiate_mask_directly-1_01.png
diff --git a/_images/instantiate_mask_directly-1_02.png b/_images/instantiate_mask_directly-1_02.png
diff --git a/_images/sections_into_arbitrary-6.png b/_images/sections_into_arbitrary-6.png
diff --git a/guides/10min.html b/guides/10min.html
@@ -156,8 +156,9 @@ <h3>Section data<a class="headerlink" href="#section-data" title="Link to this h
 <span class="gp">&gt;&gt;&gt; </span><span class="n">plt</span><span class="o">.</span><span class="n">show</span><span class="p">()</span> 
 </pre></div>
 </div>
-<div class="highlight-python notranslate"><div class="highlight"><pre><span></span><span class="kn">import</span> <span class="nn">deltametrics</span> <span class="k">as</span> <span class="nn">dm</span>
-<span class="kn">import</span> <span class="nn">matplotlib.pyplot</span> <span class="k">as</span> <span class="nn">plt</span>
+<div class="highlight-python notranslate"><div class="highlight"><pre><span></span><span class="kn">import</span> <span class="nn">matplotlib.pyplot</span> <span class="k">as</span> <span class="nn">plt</span>
+
+<span class="kn">import</span> <span class="nn">deltametrics</span> <span class="k">as</span> <span class="nn">dm</span>
 
 <span class="n">golfcube</span> <span class="o">=</span> <span class="n">dm</span><span class="o">.</span><span class="n">sample_data</span><span class="o">.</span><span class="n">golf</span><span class="p">()</span>
 <span class="n">golfcube</span><span class="o">.</span><span class="n">stratigraphy_from</span><span class="p">(</span><span class="s1">&#39;eta&#39;</span><span class="p">,</span> <span class="n">dz</span><span class="o">=</span><span class="mf">0.05</span><span class="p">)</span>

diff --git a/guides/examples/computations/preserved_velocities.html b/guides/examples/computations/preserved_velocities.html
@@ -48,9 +48,10 @@ <h1>Compute ordinariness of preserved strata<a class="headerlink" href="#compute
 <p>This assertion of “ordinariness” has been examined in the context of vertical excursions of bed elevation (whereby more extreme excursions represent extreme events; <a class="footnote-reference brackets" href="#id5" id="id3" role="doc-noteref"><span class="fn-bracket">[</span>2<span class="fn-bracket">]</span></a>).
 We can go further than this with the pyDeltaRCM model outputs, which co-locate bed elevation change with velocity, in essence recording the actual magnitude of a flow event rather than bed-elevation change.
 With this paired information we can interrogate the velocity of deposits in the stratigraphic record.</p>
-<div class="highlight-python notranslate"><div class="highlight"><pre><span></span><span class="kn">import</span> <span class="nn">numpy</span> <span class="k">as</span> <span class="nn">np</span>
+<div class="highlight-python notranslate"><div class="highlight"><pre><span></span><span class="kn">import</span> <span class="nn">matplotlib.pyplot</span> <span class="k">as</span> <span class="nn">plt</span>
+<span class="kn">import</span> <span class="nn">numpy</span> <span class="k">as</span> <span class="nn">np</span>
+
 <span class="kn">import</span> <span class="nn">deltametrics</span> <span class="k">as</span> <span class="nn">dm</span>
-<span class="kn">import</span> <span class="nn">matplotlib.pyplot</span> <span class="k">as</span> <span class="nn">plt</span>
 
 <span class="n">golfcube</span> <span class="o">=</span> <span class="n">dm</span><span class="o">.</span><span class="n">sample_data</span><span class="o">.</span><span class="n">golf</span><span class="p">()</span>
 <span class="n">golfcube</span><span class="o">.</span><span class="n">stratigraphy_from</span><span class="p">(</span><span class="s1">&#39;eta&#39;</span><span class="p">)</span>

diff --git a/guides/subject_guides/visualization.html b/guides/subject_guides/visualization.html
@@ -49,11 +49,10 @@ <h1>Visualization Guide<a class="headerlink" href="#visualization-guide" title="
 <h2>Default styling<a class="headerlink" href="#default-styling" title="Link to this heading">¶</a></h2>
 <p>By default, each variable receives a set of styling definitions.
 The default parameters of each styling variable are defined below:</p>
-<div class="highlight-python notranslate"><div class="highlight"><pre><span></span><span class="kn">import</span> <span class="nn">matplotlib.pyplot</span> <span class="k">as</span> <span class="nn">plt</span>
+<div class="highlight-python notranslate"><div class="highlight"><pre><span></span><span class="kn">import</span> <span class="nn">matplotlib</span> <span class="k">as</span> <span class="nn">mpl</span>
+<span class="kn">import</span> <span class="nn">matplotlib.pyplot</span> <span class="k">as</span> <span class="nn">plt</span>
 <span class="kn">import</span> <span class="nn">numpy</span> <span class="k">as</span> <span class="nn">np</span>
 
-<span class="kn">import</span> <span class="nn">matplotlib</span> <span class="k">as</span> <span class="nn">mpl</span>
-
 <span class="kn">import</span> <span class="nn">deltametrics</span> <span class="k">as</span> <span class="nn">dm</span>
 
 

diff --git a/index.html b/index.html
@@ -47,8 +47,9 @@ <h1>DeltaMetrics<a class="headerlink" href="#deltametrics" title="Link to this h
 <p><em>DeltaMetrics</em> is a Python package for manipulating depositional system data cubes.
 The package has robust objects and routines designed to help organize, visualize, and analyze topography and sedimentological timeseries data.
 <em>DeltaMetrics</em> works especially well with data from deltaic systems (e.g., the <a class="reference external" href="https://github.com/DeltaRCM/pyDeltaRCM">pyDeltaRCM numerical model</a>  and laboratory delta experiments).</p>
-<div class="highlight-python notranslate"><div class="highlight"><pre><span></span><span class="kn">import</span> <span class="nn">deltametrics</span> <span class="k">as</span> <span class="nn">dm</span>
-<span class="kn">import</span> <span class="nn">matplotlib.pyplot</span> <span class="k">as</span> <span class="nn">plt</span>
+<div class="highlight-python notranslate"><div class="highlight"><pre><span></span><span class="kn">import</span> <span class="nn">matplotlib.pyplot</span> <span class="k">as</span> <span class="nn">plt</span>
+
+<span class="kn">import</span> <span class="nn">deltametrics</span> <span class="k">as</span> <span class="nn">dm</span>
 
 
 <span class="n">golfcube</span> <span class="o">=</span> <span class="n">dm</span><span class="o">.</span><span class="n">sample_data</span><span class="o">.</span><span class="n">golf</span><span class="p">()</span>

diff --git a/plot_directive/_autosummary/deltametrics-plot-show_histograms-1.hires.png b/plot_directive/_autosummary/deltametrics-plot-show_histograms-1.hires.png
diff --git a/plot_directive/_autosummary/deltametrics-plot-show_histograms-1.png b/plot_directive/_autosummary/deltametrics-plot-show_histograms-1.png
diff --git a/plot_directive/guides/examples/create_from/sections_into_arbitrary-6.hires.png b/plot_directive/guides/examples/create_from/sections_into_arbitrary-6.hires.png
diff --git a/plot_directive/guides/examples/create_from/sections_into_arbitrary-6.png b/plot_directive/guides/examples/create_from/sections_into_arbitrary-6.png
diff --git a/plot_directive/guides/examples/io/connect_to_nonstandard_data-2.hires.png b/plot_directive/guides/examples/io/connect_to_nonstandard_data-2.hires.png
diff --git a/plot_directive/guides/examples/io/connect_to_nonstandard_data-2.png b/plot_directive/guides/examples/io/connect_to_nonstandard_data-2.png
diff --git a/plot_directive/guides/examples/io/instantiate_mask_directly-1_00.hires.png b/plot_directive/guides/examples/io/instantiate_mask_directly-1_00.hires.png
diff --git a/plot_directive/guides/examples/io/instantiate_mask_directly-1_00.png b/plot_directive/guides/examples/io/instantiate_mask_directly-1_00.png
diff --git a/plot_directive/guides/examples/io/instantiate_mask_directly-1_01.hires.png b/plot_directive/guides/examples/io/instantiate_mask_directly-1_01.hires.png
diff --git a/plot_directive/guides/examples/io/instantiate_mask_directly-1_01.png b/plot_directive/guides/examples/io/instantiate_mask_directly-1_01.png
diff --git a/plot_directive/guides/examples/io/instantiate_mask_directly-1_02.hires.png b/plot_directive/guides/examples/io/instantiate_mask_directly-1_02.hires.png
diff --git a/plot_directive/guides/examples/io/instantiate_mask_directly-1_02.png b/plot_directive/guides/examples/io/instantiate_mask_directly-1_02.png
diff --git a/plot_directive/pyplots/examples/preserved_velocities.py b/plot_directive/pyplots/examples/preserved_velocities.py
@@ -1,6 +1,7 @@
+import matplotlib.pyplot as plt
 import numpy as np
+
 import deltametrics as dm
-import matplotlib.pyplot as plt
 
 golfcube = dm.sample_data.golf()
 golfcube.stratigraphy_from('eta')

diff --git a/plot_directive/pyplots/guides/10min_all_sections_strat.py b/plot_directive/pyplots/guides/10min_all_sections_strat.py
@@ -1,6 +1,7 @@
-import deltametrics as dm
 import matplotlib.pyplot as plt
 
+import deltametrics as dm
+
 golfcube = dm.sample_data.golf()
 golfcube.stratigraphy_from('eta', dz=0.05)
 golfcube.register_section('demo', dm.section.StrikeSection(distance_idx=10))

diff --git a/plot_directive/pyplots/guides/cover.py b/plot_directive/pyplots/guides/cover.py
@@ -1,6 +1,7 @@
-import deltametrics as dm
 import matplotlib.pyplot as plt
 
+import deltametrics as dm
+
 
 golfcube = dm.sample_data.golf()
 golfstrat = dm.cube.StratigraphyCube.from_DataCube(

diff --git a/plot_directive/pyplots/plot/document_variableset.py b/plot_directive/pyplots/plot/document_variableset.py
@@ -1,8 +1,7 @@
+import matplotlib as mpl
 import matplotlib.pyplot as plt
 import numpy as np
 
-import matplotlib as mpl
-
 import deltametrics as dm
 
 

diff --git a/reference/plot/index.html b/reference/plot/index.html
@@ -59,11 +59,10 @@ <h1>Plotting operations<a class="headerlink" href="#plotting-operations" title="
 <span id="id1"></span><h2>Default styling<a class="headerlink" href="#default-styling" title="Link to this heading">¶</a></h2>
 <p>By default, each variable receives a set of styling definitions.
 The default parameters of each styling variable are defined below:</p>
-<div class="highlight-python notranslate"><div class="highlight"><pre><span></span><span class="kn">import</span> <span class="nn">matplotlib.pyplot</span> <span class="k">as</span> <span class="nn">plt</span>
+<div class="highlight-python notranslate"><div class="highlight"><pre><span></span><span class="kn">import</span> <span class="nn">matplotlib</span> <span class="k">as</span> <span class="nn">mpl</span>
+<span class="kn">import</span> <span class="nn">matplotlib.pyplot</span> <span class="k">as</span> <span class="nn">plt</span>
 <span class="kn">import</span> <span class="nn">numpy</span> <span class="k">as</span> <span class="nn">np</span>
 
-<span class="kn">import</span> <span class="nn">matplotlib</span> <span class="k">as</span> <span class="nn">mpl</span>
-
 <span class="kn">import</span> <span class="nn">deltametrics</span> <span class="k">as</span> <span class="nn">dm</span>