Add pyproject.toml file for static metadata

.github/workflows/build.yml

@@ -57,14 +57,11 @@ jobs:
         python-version: '3.12'
     - name: Install dependencies
       run: |
-        python -m pip install --upgrade pip
-        pip install -r requirements.txt
         pip install -r requirements-docs.txt
         sudo apt update -y && sudo apt install -y latexmk texlive-latex-recommended texlive-latex-extra texlive-fonts-recommended dvipng
     - name: Install DeltaMetrics
       run: |
-        pip install setuptools
-        pip install --no-build-isolation .
+        pip install .
     - name: Build and test documentation
       run: |
         (cd docs && make docs)

deltametrics/__init__.py

@@ -1,9 +1,2 @@
-from . import cube
-from . import plan
-from . import mask
-from . import mobility
-from . import section
-from . import strat
-from . import utils
-from . import sample_data
-from ._version import __version__
+import deltametrics.sample_data as sample_data
+from deltametrics._version import __version__

deltametrics/sample_data/__init__.py

@@ -1,14 +1,6 @@
-from .sample_data import (
-    _get_golf_path,
-    _get_xslope_path,
-    _get_aeolian_path,
-    _get_rcm8_path,
-    _get_landsat_path,
-    golf,
-    xslope,
-    aeolian,
-    rcm8,
-    landsat,
-    savi2020
-)
-from . import cube
+from deltametrics.sample_data.sample_data import aeolian
+from deltametrics.sample_data.sample_data import golf
+from deltametrics.sample_data.sample_data import landsat
+from deltametrics.sample_data.sample_data import rcm8
+from deltametrics.sample_data.sample_data import savi2020
+from deltametrics.sample_data.sample_data import xslope

deltametrics/sample_data/sample_data.py

@@ -1,15 +1,20 @@
 import sys
 import os
-import pkg_resources
 import warnings
 
 import numpy as np
 import netCDF4
 import pooch
 
+if sys.version_info >= (3, 12):  # pragma: no cover (PY12+)
+    import importlib.resources as importlib_resources
+else:  # pragma: no cover (<PY312)
+    import importlib_resources
+
 from deltametrics._version import __version__
 from deltametrics.cube import DataCube
 
+
 # enusre DeprecationWarning is shown
 warnings.simplefilter("default")
 
@@ -20,7 +25,8 @@
     base_url='https://github.com/DeltaRCM/DeltaMetrics/raw/develop/deltametrics/sample_data/files/',
     env="DELTAMETRICS_DATA_DIR",
 )
-with pkg_resources.resource_stream("deltametrics.sample_data", "registry.txt") as registry_file:
+path_to_registry = importlib_resources.files("deltametrics.sample_data").joinpath("registry.txt")
+with open(path_to_registry, "rb") as registry_file:
     REGISTRY.load_registry(registry_file)
 
 

pyproject.toml

@@ -0,0 +1,113 @@
+[project]
+name = "DeltaMetrics"
+requires-python = ">=3.8"
+description = "Tools for manipulating sedimentologic data cubes."
+keywords = [
+]
+authors = [
+    { name = "Andrew Moodie", email = "[email protected]" },
+]
+maintainers = [
+    { name = "Andrew Moodie", email = "[email protected]" },
+]
+classifiers = [
+    "Development Status :: 4 - Beta",
+    "Intended Audience :: Science/Research",
+    "License :: OSI Approved :: MIT License",
+    "Operating System :: OS Independent",
+    "Programming Language :: Python :: 3 :: Only",
+    "Programming Language :: Python :: 3.8",
+    "Programming Language :: Python :: 3.9",
+    "Programming Language :: Python :: 3.10",
+    "Programming Language :: Python :: Implementation :: CPython",
+    "Topic :: Scientific/Engineering :: Hydrology",
+    "Topic :: Scientific/Engineering :: Physics",
+]
+dependencies = [
+    "h5py",
+    "h5netcdf",
+    "importlib-resources; python_version < '3.12'",
+    "matplotlib",
+    "netCDF4",
+    "numba",
+    "numpy",
+    "pooch",
+    "pyyaml",
+    "scikit-image",
+    "scipy",
+    "xarray",
+]
+dynamic = [
+    "version",
+    "readme",
+]
+
+[project.license]
+text = "MIT"
+
+[project.urls]
+documentation = "https://deltarcm.github.io/deltametrics"
+homepage = "https://github.com/DeltaRCM/DeltaMetrics"
+repository = "https://github.com/DeltaRCM/DeltaMetrics"
+
+[build-system]
+requires = [
+    "setuptools >=61",
+]
+build-backend = "setuptools.build_meta"
+
+[tool.setuptools.dynamic.readme]
+file = "README.rst"
+content-type = "text/x-rst"
+
+[tool.setuptools.dynamic.version]
+attr = "deltametrics._version.__version__"
+
+[tool.setuptools]
+include-package-data = true
+
+[tool.setuptools.package-data]
+deltametrics = [
+    "sample_data/registry.txt",
+]
+
+[project.optional-dependencies]
+docs = [
+    "pyvista",
+    "sphinx",
+]
+testing = [
+    "coveralls",
+    "pytest",
+    "pytest-cov",
+]
+
+[tool.setuptools.packages.find]
+where = [
+    ".",
+]
+include = [
+    "deltametrics*",
+]
+
+[tool.coverage.run]
+relative_files = true
+
+[tool.pytest.ini_options]
+minversion = "6.0"
+testpaths = [
+    "tests",
+]
+norecursedirs = [
+    ".*",
+    "*.egg*",
+    "build",
+    "dist",
+]
+addopts = [
+    "--ignore=setup.py",
+    "--tb=native",
+    "--durations=16",
+    "--strict-markers",
+    "-vvv",
+]

requirements.txt

@@ -1,3 +1,4 @@
+importlib-resources; python_version < '3.12'
 matplotlib>3.6.0
 numpy>=1.20
 scipy>=1.5