Merge pull request #136 from sanger-pathogens/farm5

farm5 changes should be in master

Dockerfile

@@ -0,0 +1,27 @@
+FROM ubuntu:18.04
+
+ENV DEBIAN_FRONTEND=noninteractive
+LABEL [email protected]
+
+# install system deps
+RUN apt-get -qq update && \
+	apt-get install --quiet --assume-yes libmysqlclient-dev locales git curl cpanminus build-essential libssl-dev libcrypt-ssleay-perl dh-dist-zilla && \
+ 	apt-get clean
+
+# fix locales
+RUN   sed -i -e 's/# \(en_GB\.UTF-8 .*\)/\1/' /etc/locale.gen && \
+      touch /usr/share/locale/locale.alias && \
+      locale-gen
+ENV   LANG     en_GB.UTF-8
+ENV   LANGUAGE en_GB:en
+ENV   LC_ALL   en_GB.UTF-8
+
+# copy and install (with perl deps)
+COPY . /opt/Bio-VertRes-Config
+WORKDIR /opt/Bio-VertRes-Config
+RUN	dzil authordeps --missing | cpanm --force && \
+    cpanm Pod::Elemental::Transformer::List && \
+	cpanm DBD::mysql && \
+	dzil listdeps --missing | cpanm --force && \
+	dzil test && \
+	dzil install