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Write missing scaffolds to contaminants when Target tag is used
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@jgrg
jgrg committed Nov 26, 2024
1 parent fb5c4ae commit b1d2a05
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Showing 4 changed files with 147 additions and 148 deletions.
5 changes: 5 additions & 0 deletions src/tola/assembly/build_assembly.py
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Original file line number Diff line number Diff line change
Expand Up @@ -252,6 +252,11 @@ def add_missing_scaffolds_from_input(self, input_asm: Assembly) -> None:

if new_scffld:
scaffold_namer.make_scaffold_name(new_scffld)
if (
scaffold_namer.target_tags
and "Target" not in scffld.fragment_tags()
):
new_scffld.tag = "Contaminant"
new_scffld.haplotype = scaffold_namer.current_haplotype
self.add_scaffold(new_scffld)

Expand Down
137 changes: 137 additions & 0 deletions tests/data/csSphGirg1_1_hr/csSphGirg1_1_hr-pretext-to-tpf.contaminants.tpf
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Expand Up @@ -645,32 +645,169 @@ GAP TYPE-2 200
? SCAFFOLD_5009:1-6000 SCAFFOLD_5009 PLUS
? SCAFFOLD_5020:1-5000 SCAFFOLD_5020 PLUS
? SCAFFOLD_5043:1-4000 SCAFFOLD_5043 PLUS
? SCAFFOLD_5064:1-3000 SCAFFOLD_5064 PLUS
? SCAFFOLD_5085:1-3000 SCAFFOLD_5085 PLUS
? SCAFFOLD_5093:1-2000 SCAFFOLD_5093 PLUS
? SCAFFOLD_5096:1-2000 SCAFFOLD_5096 PLUS
? SCAFFOLD_5099:1-2000 SCAFFOLD_5099 PLUS
? SCAFFOLD_5100:1-2000 SCAFFOLD_5100 PLUS
? SCAFFOLD_5101:1-2000 SCAFFOLD_5101 PLUS
? SCAFFOLD_5106:1-2000 SCAFFOLD_5106 PLUS
? SCAFFOLD_5107:1-2000 SCAFFOLD_5107 PLUS
? SCAFFOLD_5110:1-2000 SCAFFOLD_5110 PLUS
? SCAFFOLD_5121:1-2000 SCAFFOLD_5121 PLUS
? SCAFFOLD_5122:1-2000 SCAFFOLD_5122 PLUS
? SCAFFOLD_5123:1-2000 SCAFFOLD_5123 PLUS
? SCAFFOLD_5124:1-2000 SCAFFOLD_5124 PLUS
? SCAFFOLD_5127:1-2000 SCAFFOLD_5127 PLUS
? SCAFFOLD_5128:1-2000 SCAFFOLD_5128 PLUS
? SCAFFOLD_5129:1-2000 SCAFFOLD_5129 PLUS
? SCAFFOLD_5130:1-2000 SCAFFOLD_5130 PLUS
? SCAFFOLD_5131:1-2000 SCAFFOLD_5131 PLUS
? SCAFFOLD_5137:1-2000 SCAFFOLD_5137 PLUS
? SCAFFOLD_5138:1-2000 SCAFFOLD_5138 PLUS
? SCAFFOLD_5140:1-2000 SCAFFOLD_5140 PLUS
? SCAFFOLD_5143:1-2000 SCAFFOLD_5143 PLUS
? SCAFFOLD_5145:1-2000 SCAFFOLD_5145 PLUS
? SCAFFOLD_5146:1-2000 SCAFFOLD_5146 PLUS
? SCAFFOLD_5150:1-2000 SCAFFOLD_5150 PLUS
? SCAFFOLD_5152:1-2000 SCAFFOLD_5152 PLUS
? SCAFFOLD_5155:1-2000 SCAFFOLD_5155 PLUS
? SCAFFOLD_5161:1-2000 SCAFFOLD_5161 PLUS
? SCAFFOLD_5167:1-1000 SCAFFOLD_5167 PLUS
? SCAFFOLD_5170:1-1000 SCAFFOLD_5170 PLUS
? SCAFFOLD_5172:1-1000 SCAFFOLD_5172 PLUS
? SCAFFOLD_5175:1-1000 SCAFFOLD_5175 PLUS
? SCAFFOLD_5177:1-1000 SCAFFOLD_5177 PLUS
? SCAFFOLD_5178:1-1000 SCAFFOLD_5178 PLUS
? SCAFFOLD_5179:1-1000 SCAFFOLD_5179 PLUS
? SCAFFOLD_5180:1-1000 SCAFFOLD_5180 PLUS
? SCAFFOLD_5183:1-1000 SCAFFOLD_5183 PLUS
? SCAFFOLD_5184:1-1000 SCAFFOLD_5184 PLUS
? SCAFFOLD_5189:1-1000 SCAFFOLD_5189 PLUS
? SCAFFOLD_5190:1-1000 SCAFFOLD_5190 PLUS
? SCAFFOLD_5191:1-1000 SCAFFOLD_5191 PLUS
? SCAFFOLD_5192:1-1000 SCAFFOLD_5192 PLUS
? SCAFFOLD_5193:1-1000 SCAFFOLD_5193 PLUS
? SCAFFOLD_5194:1-1000 SCAFFOLD_5194 PLUS
? SCAFFOLD_5195:1-1000 SCAFFOLD_5195 PLUS
? SCAFFOLD_5196:1-1000 SCAFFOLD_5196 PLUS
? SCAFFOLD_5198:1-1000 SCAFFOLD_5198 PLUS
? SCAFFOLD_5201:1-1000 SCAFFOLD_5201 PLUS
? SCAFFOLD_5202:1-1000 SCAFFOLD_5202 PLUS
? SCAFFOLD_5203:1-1000 SCAFFOLD_5203 PLUS
? SCAFFOLD_5204:1-1000 SCAFFOLD_5204 PLUS
? SCAFFOLD_5205:1-1000 SCAFFOLD_5205 PLUS
? SCAFFOLD_5209:1-1000 SCAFFOLD_5209 PLUS
? SCAFFOLD_5211:1-1000 SCAFFOLD_5211 PLUS
? SCAFFOLD_5214:1-1000 SCAFFOLD_5214 PLUS
? SCAFFOLD_5216:1-1000 SCAFFOLD_5216 PLUS
? SCAFFOLD_5217:1-1000 SCAFFOLD_5217 PLUS
? SCAFFOLD_5220:1-1000 SCAFFOLD_5220 PLUS
? SCAFFOLD_5221:1-1000 SCAFFOLD_5221 PLUS
? SCAFFOLD_5222:1-1000 SCAFFOLD_5222 PLUS
? SCAFFOLD_5224:1-1000 SCAFFOLD_5224 PLUS
? SCAFFOLD_5225:1-1000 SCAFFOLD_5225 PLUS
? SCAFFOLD_5226:1-1000 SCAFFOLD_5226 PLUS
? SCAFFOLD_5227:1-1000 SCAFFOLD_5227 PLUS
? SCAFFOLD_5228:1-1000 SCAFFOLD_5228 PLUS
? SCAFFOLD_5229:1-1000 SCAFFOLD_5229 PLUS
? SCAFFOLD_5231:1-1000 SCAFFOLD_5231 PLUS
? SCAFFOLD_5234:1-1000 SCAFFOLD_5234 PLUS
? SCAFFOLD_5235:1-1000 SCAFFOLD_5235 PLUS
? SCAFFOLD_5237:1-1000 SCAFFOLD_5237 PLUS
? SCAFFOLD_5238:1-1000 SCAFFOLD_5238 PLUS
? SCAFFOLD_5239:1-1000 SCAFFOLD_5239 PLUS
? SCAFFOLD_5240:1-1000 SCAFFOLD_5240 PLUS
? SCAFFOLD_5242:1-1000 SCAFFOLD_5242 PLUS
? SCAFFOLD_5243:1-1000 SCAFFOLD_5243 PLUS
? SCAFFOLD_5245:1-1000 SCAFFOLD_5245 PLUS
? SCAFFOLD_5246:1-1000 SCAFFOLD_5246 PLUS
? SCAFFOLD_5248:1-1000 SCAFFOLD_5248 PLUS
? SCAFFOLD_5252:1-1000 SCAFFOLD_5252 PLUS
? SCAFFOLD_5253:1-1000 SCAFFOLD_5253 PLUS
? SCAFFOLD_5254:1-1000 SCAFFOLD_5254 PLUS
? SCAFFOLD_5255:1-1000 SCAFFOLD_5255 PLUS
? SCAFFOLD_5260:1-1000 SCAFFOLD_5260 PLUS
? SCAFFOLD_5264:1-1000 SCAFFOLD_5264 PLUS
? SCAFFOLD_5265:1-1000 SCAFFOLD_5265 PLUS
? SCAFFOLD_5267:1-1000 SCAFFOLD_5267 PLUS
? SCAFFOLD_5268:1-1000 SCAFFOLD_5268 PLUS
? SCAFFOLD_5270:1-1000 SCAFFOLD_5270 PLUS
? SCAFFOLD_5271:1-1000 SCAFFOLD_5271 PLUS
? SCAFFOLD_5272:1-1000 SCAFFOLD_5272 PLUS
? SCAFFOLD_5273:1-1000 SCAFFOLD_5273 PLUS
? SCAFFOLD_5276:1-1000 SCAFFOLD_5276 PLUS
? SCAFFOLD_5277:1-1000 SCAFFOLD_5277 PLUS
? SCAFFOLD_5278:1-1000 SCAFFOLD_5278 PLUS
? SCAFFOLD_5279:1-1000 SCAFFOLD_5279 PLUS
? SCAFFOLD_5282:1-1000 SCAFFOLD_5282 PLUS
? SCAFFOLD_5283:1-1000 SCAFFOLD_5283 PLUS
? SCAFFOLD_5284:1-1000 SCAFFOLD_5284 PLUS
? SCAFFOLD_5286:1-1000 SCAFFOLD_5286 PLUS
? SCAFFOLD_5287:1-1000 SCAFFOLD_5287 PLUS
? SCAFFOLD_5288:1-1000 SCAFFOLD_5288 PLUS
? SCAFFOLD_5289:1-1000 SCAFFOLD_5289 PLUS
? SCAFFOLD_5291:1-1000 SCAFFOLD_5291 PLUS
? SCAFFOLD_5292:1-1000 SCAFFOLD_5292 PLUS
? SCAFFOLD_5294:1-1000 SCAFFOLD_5294 PLUS
? SCAFFOLD_5295:1-1000 SCAFFOLD_5295 PLUS
? SCAFFOLD_5296:1-1000 SCAFFOLD_5296 PLUS
? SCAFFOLD_5297:1-1000 SCAFFOLD_5297 PLUS
? SCAFFOLD_5298:1-1000 SCAFFOLD_5298 PLUS
? SCAFFOLD_5299:1-1000 SCAFFOLD_5299 PLUS
? SCAFFOLD_5303:1-1000 SCAFFOLD_5303 PLUS
? SCAFFOLD_5305:1-1000 SCAFFOLD_5305 PLUS
? SCAFFOLD_5306:1-1000 SCAFFOLD_5306 PLUS
? SCAFFOLD_5307:1-1000 SCAFFOLD_5307 PLUS
? SCAFFOLD_5309:1-1000 SCAFFOLD_5309 PLUS
? SCAFFOLD_5314:1-1000 SCAFFOLD_5314 PLUS
? SCAFFOLD_5315:1-1000 SCAFFOLD_5315 PLUS
? SCAFFOLD_5318:1-1000 SCAFFOLD_5318 PLUS
? SCAFFOLD_5320:1-1000 SCAFFOLD_5320 PLUS
? SCAFFOLD_5321:1-1000 SCAFFOLD_5321 PLUS
? SCAFFOLD_5322:1-1000 SCAFFOLD_5322 PLUS
? SCAFFOLD_5324:1-1000 SCAFFOLD_5324 PLUS
? SCAFFOLD_5326:1-1000 SCAFFOLD_5326 PLUS
? SCAFFOLD_5327:1-1000 SCAFFOLD_5327 PLUS
? SCAFFOLD_5328:1-1000 SCAFFOLD_5328 PLUS
? SCAFFOLD_5330:1-1000 SCAFFOLD_5330 PLUS
? SCAFFOLD_5331:1-1000 SCAFFOLD_5331 PLUS
? SCAFFOLD_5332:1-1000 SCAFFOLD_5332 PLUS
? SCAFFOLD_5335:1-1000 SCAFFOLD_5335 PLUS
? SCAFFOLD_5336:1-1000 SCAFFOLD_5336 PLUS
? SCAFFOLD_5337:1-1000 SCAFFOLD_5337 PLUS
? SCAFFOLD_5338:1-1000 SCAFFOLD_5338 PLUS
? SCAFFOLD_5339:1-1000 SCAFFOLD_5339 PLUS
? SCAFFOLD_5341:1-1000 SCAFFOLD_5341 PLUS
? SCAFFOLD_5342:1-1000 SCAFFOLD_5342 PLUS
? SCAFFOLD_5345:1-1000 SCAFFOLD_5345 PLUS
? SCAFFOLD_5346:1-1000 SCAFFOLD_5346 PLUS
? SCAFFOLD_5347:1-1000 SCAFFOLD_5347 PLUS
? SCAFFOLD_5349:1-1000 SCAFFOLD_5349 PLUS
? SCAFFOLD_5350:1-1000 SCAFFOLD_5350 PLUS
? SCAFFOLD_5351:1-1000 SCAFFOLD_5351 PLUS
? SCAFFOLD_5352:1-1000 SCAFFOLD_5352 PLUS
? SCAFFOLD_5353:1-1000 SCAFFOLD_5353 PLUS
? SCAFFOLD_5354:1-1000 SCAFFOLD_5354 PLUS
? SCAFFOLD_5355:1-1000 SCAFFOLD_5355 PLUS
? SCAFFOLD_5357:1-1000 SCAFFOLD_5357 PLUS
? SCAFFOLD_5359:1-1000 SCAFFOLD_5359 PLUS
? SCAFFOLD_5365:1-1000 SCAFFOLD_5365 PLUS
? SCAFFOLD_5366:1-1000 SCAFFOLD_5366 PLUS
? SCAFFOLD_5367:1-1000 SCAFFOLD_5367 PLUS
? SCAFFOLD_5368:1-1000 SCAFFOLD_5368 PLUS
? SCAFFOLD_5369:1-1000 SCAFFOLD_5369 PLUS
? SCAFFOLD_5370:1-1000 SCAFFOLD_5370 PLUS
? SCAFFOLD_5372:1-1000 SCAFFOLD_5372 PLUS
? SCAFFOLD_5374:1-1000 SCAFFOLD_5374 PLUS
? SCAFFOLD_5375:1-1000 SCAFFOLD_5375 PLUS
? SCAFFOLD_5379:1-1000 SCAFFOLD_5379 PLUS
? SCAFFOLD_5380:1-1000 SCAFFOLD_5380 PLUS
? SCAFFOLD_5381:1-1000 SCAFFOLD_5381 PLUS
? SCAFFOLD_5384:1-1000 SCAFFOLD_5384 PLUS
? SCAFFOLD_5386:1-1000 SCAFFOLD_5386 PLUS
? SCAFFOLD_5387:1-1000 SCAFFOLD_5387 PLUS
? SCAFFOLD_5388:1-1000 SCAFFOLD_5388 PLUS
? SCAFFOLD_5390:1-1000 SCAFFOLD_5390 PLUS
? SCAFFOLD_5395:1-1000 SCAFFOLD_5395 PLUS
16 changes: 5 additions & 11 deletions tests/data/csSphGirg1_1_hr/csSphGirg1_1_hr-pretext-to-tpf.log
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Original file line number Diff line number Diff line change
Expand Up @@ -2,26 +2,20 @@ Pretext resolution = 6,826 bp per texel


csSphGirg1_1_hr-pretext-to-tpf
431,990,959 bp sequence (minus gaps)
431,830,959 bp sequence (minus gaps)
Autosomes:
n = 21
35,515,324 SUPER_1
... ...
1,588,691 SUPER_21
431,830,959 bp total
Unplaced:
n = 137
3,000 SCAFFOLD_5064
... ...
1,000 SCAFFOLD_5395
160,000 bp total

csSphGirg1_1_hr-pretext-to-tpf.contaminants
15,253,452 bp sequence (minus gaps)
n = 502
15,413,452 bp sequence (minus gaps)
n = 639
269,705 SCAFFOLD_62
... ...
1,000 SCAFFOLD_5390
15,253,452 bp total
1,000 SCAFFOLD_5395
15,413,452 bp total

Curation made 0 cuts in contigs, 3 breaks at gaps and 4 joins
137 changes: 0 additions & 137 deletions tests/data/csSphGirg1_1_hr/csSphGirg1_1_hr-pretext-to-tpf.tpf
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Original file line number Diff line number Diff line change
Expand Up @@ -799,140 +799,3 @@ GAP TYPE-2 200
GAP TYPE-2 200
? SCAFFOLD_23:2678578-5348773 SUPER_20 PLUS
? SCAFFOLD_23:5348974-6937664 SUPER_21 PLUS
? SCAFFOLD_5064:1-3000 SCAFFOLD_5064 PLUS
? SCAFFOLD_5085:1-3000 SCAFFOLD_5085 PLUS
? SCAFFOLD_5096:1-2000 SCAFFOLD_5096 PLUS
? SCAFFOLD_5099:1-2000 SCAFFOLD_5099 PLUS
? SCAFFOLD_5101:1-2000 SCAFFOLD_5101 PLUS
? SCAFFOLD_5106:1-2000 SCAFFOLD_5106 PLUS
? SCAFFOLD_5110:1-2000 SCAFFOLD_5110 PLUS
? SCAFFOLD_5121:1-2000 SCAFFOLD_5121 PLUS
? SCAFFOLD_5122:1-2000 SCAFFOLD_5122 PLUS
? SCAFFOLD_5124:1-2000 SCAFFOLD_5124 PLUS
? SCAFFOLD_5127:1-2000 SCAFFOLD_5127 PLUS
? SCAFFOLD_5129:1-2000 SCAFFOLD_5129 PLUS
? SCAFFOLD_5130:1-2000 SCAFFOLD_5130 PLUS
? SCAFFOLD_5131:1-2000 SCAFFOLD_5131 PLUS
? SCAFFOLD_5138:1-2000 SCAFFOLD_5138 PLUS
? SCAFFOLD_5140:1-2000 SCAFFOLD_5140 PLUS
? SCAFFOLD_5145:1-2000 SCAFFOLD_5145 PLUS
? SCAFFOLD_5146:1-2000 SCAFFOLD_5146 PLUS
? SCAFFOLD_5152:1-2000 SCAFFOLD_5152 PLUS
? SCAFFOLD_5155:1-2000 SCAFFOLD_5155 PLUS
? SCAFFOLD_5161:1-2000 SCAFFOLD_5161 PLUS
? SCAFFOLD_5170:1-1000 SCAFFOLD_5170 PLUS
? SCAFFOLD_5172:1-1000 SCAFFOLD_5172 PLUS
? SCAFFOLD_5175:1-1000 SCAFFOLD_5175 PLUS
? SCAFFOLD_5177:1-1000 SCAFFOLD_5177 PLUS
? SCAFFOLD_5178:1-1000 SCAFFOLD_5178 PLUS
? SCAFFOLD_5179:1-1000 SCAFFOLD_5179 PLUS
? SCAFFOLD_5183:1-1000 SCAFFOLD_5183 PLUS
? SCAFFOLD_5184:1-1000 SCAFFOLD_5184 PLUS
? SCAFFOLD_5189:1-1000 SCAFFOLD_5189 PLUS
? SCAFFOLD_5190:1-1000 SCAFFOLD_5190 PLUS
? SCAFFOLD_5191:1-1000 SCAFFOLD_5191 PLUS
? SCAFFOLD_5192:1-1000 SCAFFOLD_5192 PLUS
? SCAFFOLD_5194:1-1000 SCAFFOLD_5194 PLUS
? SCAFFOLD_5195:1-1000 SCAFFOLD_5195 PLUS
? SCAFFOLD_5196:1-1000 SCAFFOLD_5196 PLUS
? SCAFFOLD_5198:1-1000 SCAFFOLD_5198 PLUS
? SCAFFOLD_5201:1-1000 SCAFFOLD_5201 PLUS
? SCAFFOLD_5203:1-1000 SCAFFOLD_5203 PLUS
? SCAFFOLD_5204:1-1000 SCAFFOLD_5204 PLUS
? SCAFFOLD_5205:1-1000 SCAFFOLD_5205 PLUS
? SCAFFOLD_5209:1-1000 SCAFFOLD_5209 PLUS
? SCAFFOLD_5211:1-1000 SCAFFOLD_5211 PLUS
? SCAFFOLD_5214:1-1000 SCAFFOLD_5214 PLUS
? SCAFFOLD_5217:1-1000 SCAFFOLD_5217 PLUS
? SCAFFOLD_5220:1-1000 SCAFFOLD_5220 PLUS
? SCAFFOLD_5221:1-1000 SCAFFOLD_5221 PLUS
? SCAFFOLD_5222:1-1000 SCAFFOLD_5222 PLUS
? SCAFFOLD_5224:1-1000 SCAFFOLD_5224 PLUS
? SCAFFOLD_5225:1-1000 SCAFFOLD_5225 PLUS
? SCAFFOLD_5227:1-1000 SCAFFOLD_5227 PLUS
? SCAFFOLD_5228:1-1000 SCAFFOLD_5228 PLUS
? SCAFFOLD_5229:1-1000 SCAFFOLD_5229 PLUS
? SCAFFOLD_5231:1-1000 SCAFFOLD_5231 PLUS
? SCAFFOLD_5234:1-1000 SCAFFOLD_5234 PLUS
? SCAFFOLD_5235:1-1000 SCAFFOLD_5235 PLUS
? SCAFFOLD_5238:1-1000 SCAFFOLD_5238 PLUS
? SCAFFOLD_5239:1-1000 SCAFFOLD_5239 PLUS
? SCAFFOLD_5240:1-1000 SCAFFOLD_5240 PLUS
? SCAFFOLD_5242:1-1000 SCAFFOLD_5242 PLUS
? SCAFFOLD_5243:1-1000 SCAFFOLD_5243 PLUS
? SCAFFOLD_5246:1-1000 SCAFFOLD_5246 PLUS
? SCAFFOLD_5248:1-1000 SCAFFOLD_5248 PLUS
? SCAFFOLD_5252:1-1000 SCAFFOLD_5252 PLUS
? SCAFFOLD_5253:1-1000 SCAFFOLD_5253 PLUS
? SCAFFOLD_5254:1-1000 SCAFFOLD_5254 PLUS
? SCAFFOLD_5255:1-1000 SCAFFOLD_5255 PLUS
? SCAFFOLD_5264:1-1000 SCAFFOLD_5264 PLUS
? SCAFFOLD_5265:1-1000 SCAFFOLD_5265 PLUS
? SCAFFOLD_5267:1-1000 SCAFFOLD_5267 PLUS
? SCAFFOLD_5268:1-1000 SCAFFOLD_5268 PLUS
? SCAFFOLD_5270:1-1000 SCAFFOLD_5270 PLUS
? SCAFFOLD_5271:1-1000 SCAFFOLD_5271 PLUS
? SCAFFOLD_5273:1-1000 SCAFFOLD_5273 PLUS
? SCAFFOLD_5276:1-1000 SCAFFOLD_5276 PLUS
? SCAFFOLD_5277:1-1000 SCAFFOLD_5277 PLUS
? SCAFFOLD_5278:1-1000 SCAFFOLD_5278 PLUS
? SCAFFOLD_5279:1-1000 SCAFFOLD_5279 PLUS
? SCAFFOLD_5282:1-1000 SCAFFOLD_5282 PLUS
? SCAFFOLD_5284:1-1000 SCAFFOLD_5284 PLUS
? SCAFFOLD_5286:1-1000 SCAFFOLD_5286 PLUS
? SCAFFOLD_5287:1-1000 SCAFFOLD_5287 PLUS
? SCAFFOLD_5288:1-1000 SCAFFOLD_5288 PLUS
? SCAFFOLD_5289:1-1000 SCAFFOLD_5289 PLUS
? SCAFFOLD_5292:1-1000 SCAFFOLD_5292 PLUS
? SCAFFOLD_5294:1-1000 SCAFFOLD_5294 PLUS
? SCAFFOLD_5295:1-1000 SCAFFOLD_5295 PLUS
? SCAFFOLD_5296:1-1000 SCAFFOLD_5296 PLUS
? SCAFFOLD_5297:1-1000 SCAFFOLD_5297 PLUS
? SCAFFOLD_5298:1-1000 SCAFFOLD_5298 PLUS
? SCAFFOLD_5303:1-1000 SCAFFOLD_5303 PLUS
? SCAFFOLD_5305:1-1000 SCAFFOLD_5305 PLUS
? SCAFFOLD_5306:1-1000 SCAFFOLD_5306 PLUS
? SCAFFOLD_5307:1-1000 SCAFFOLD_5307 PLUS
? SCAFFOLD_5309:1-1000 SCAFFOLD_5309 PLUS
? SCAFFOLD_5314:1-1000 SCAFFOLD_5314 PLUS
? SCAFFOLD_5318:1-1000 SCAFFOLD_5318 PLUS
? SCAFFOLD_5320:1-1000 SCAFFOLD_5320 PLUS
? SCAFFOLD_5321:1-1000 SCAFFOLD_5321 PLUS
? SCAFFOLD_5322:1-1000 SCAFFOLD_5322 PLUS
? SCAFFOLD_5324:1-1000 SCAFFOLD_5324 PLUS
? SCAFFOLD_5326:1-1000 SCAFFOLD_5326 PLUS
? SCAFFOLD_5328:1-1000 SCAFFOLD_5328 PLUS
? SCAFFOLD_5330:1-1000 SCAFFOLD_5330 PLUS
? SCAFFOLD_5331:1-1000 SCAFFOLD_5331 PLUS
? SCAFFOLD_5332:1-1000 SCAFFOLD_5332 PLUS
? SCAFFOLD_5335:1-1000 SCAFFOLD_5335 PLUS
? SCAFFOLD_5337:1-1000 SCAFFOLD_5337 PLUS
? SCAFFOLD_5338:1-1000 SCAFFOLD_5338 PLUS
? SCAFFOLD_5339:1-1000 SCAFFOLD_5339 PLUS
? SCAFFOLD_5341:1-1000 SCAFFOLD_5341 PLUS
? SCAFFOLD_5342:1-1000 SCAFFOLD_5342 PLUS
? SCAFFOLD_5345:1-1000 SCAFFOLD_5345 PLUS
? SCAFFOLD_5347:1-1000 SCAFFOLD_5347 PLUS
? SCAFFOLD_5349:1-1000 SCAFFOLD_5349 PLUS
? SCAFFOLD_5350:1-1000 SCAFFOLD_5350 PLUS
? SCAFFOLD_5351:1-1000 SCAFFOLD_5351 PLUS
? SCAFFOLD_5352:1-1000 SCAFFOLD_5352 PLUS
? SCAFFOLD_5353:1-1000 SCAFFOLD_5353 PLUS
? SCAFFOLD_5355:1-1000 SCAFFOLD_5355 PLUS
? SCAFFOLD_5357:1-1000 SCAFFOLD_5357 PLUS
? SCAFFOLD_5359:1-1000 SCAFFOLD_5359 PLUS
? SCAFFOLD_5365:1-1000 SCAFFOLD_5365 PLUS
? SCAFFOLD_5366:1-1000 SCAFFOLD_5366 PLUS
? SCAFFOLD_5368:1-1000 SCAFFOLD_5368 PLUS
? SCAFFOLD_5369:1-1000 SCAFFOLD_5369 PLUS
? SCAFFOLD_5370:1-1000 SCAFFOLD_5370 PLUS
? SCAFFOLD_5372:1-1000 SCAFFOLD_5372 PLUS
? SCAFFOLD_5374:1-1000 SCAFFOLD_5374 PLUS
? SCAFFOLD_5375:1-1000 SCAFFOLD_5375 PLUS
? SCAFFOLD_5380:1-1000 SCAFFOLD_5380 PLUS
? SCAFFOLD_5381:1-1000 SCAFFOLD_5381 PLUS
? SCAFFOLD_5384:1-1000 SCAFFOLD_5384 PLUS
? SCAFFOLD_5386:1-1000 SCAFFOLD_5386 PLUS
? SCAFFOLD_5387:1-1000 SCAFFOLD_5387 PLUS
? SCAFFOLD_5388:1-1000 SCAFFOLD_5388 PLUS
? SCAFFOLD_5395:1-1000 SCAFFOLD_5395 PLUS

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