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Merge pull request #50 from sanger-tol/test_full_upd #27

Merge pull request #50 from sanger-tol/test_full_upd

Merge pull request #50 from sanger-tol/test_full_upd #27

name: sanger-tol LSF full size tests
on:
push:
branches:
- main
- dev
workflow_dispatch:
jobs:
run-tower:
name: Run LSF full size tests
runs-on: ubuntu-latest
steps:
- name: Sets env vars for push
run: |
echo "REVISION=${{ github.sha }}" >> $GITHUB_ENV
if: github.event_name == 'push'
- name: Sets env vars for workflow_dispatch
run: |
echo "REVISION=${{ github.sha }}" >> $GITHUB_ENV
if: github.event_name == 'workflow_dispatch'
- name: Launch workflow via tower
uses: seqeralabs/action-tower-launch@v2
with:
workspace_id: ${{ secrets.TOWER_WORKSPACE_ID }}
access_token: ${{ secrets.TOWER_ACCESS_TOKEN }}
compute_env: ${{ secrets.TOWER_COMPUTE_ENV }}
revision: ${{ env.REVISION }}
workdir: ${{ secrets.TOWER_WORKDIR_PARENT }}/work/${{ github.repository }}/work-${{ env.REVISION }}
parameters: |
{
"outdir": "${{ secrets.TOWER_WORKDIR_PARENT }}/results/${{ github.repository }}/results-${{ env.REVISION }}",
}
profiles: test_full,sanger,singularity,cleanup
- uses: actions/upload-artifact@v3
with:
name: Tower debug log file
path: |
tower_action_*.log
tower_action_*.json