test on 8 cores large runner

sanger-tol · Dec 1, 2023 · 2465426 · 2465426
1 parent 2aa72cb
commit 2465426
Show file tree

Hide file tree

Showing 2 changed files with 5 additions and 5 deletions.
diff --git a/.github/workflows/ci.yml b/.github/workflows/ci.yml
@@ -21,7 +21,7 @@ jobs:
     name: Run pipeline with test data
     # Only run on push if this is the nf-core dev branch (merged PRs)
     if: "${{ github.event_name != 'push' || (github.event_name == 'push' && github.repository == 'sanger-tol/genomeassembly') }}"
-    runs-on: self-hosted 
+    runs-on: ubuntu2204-8c 
     strategy:
       matrix:
         NXF_VER:
@@ -42,4 +42,4 @@ jobs:
 
       - name: Run pipeline with test data
         run: |
-          nextflow run ${GITHUB_WORKSPACE} -profile test_github,docker -c conf/hifiasm_test.config --organelles_on --outdir ./results
+          nextflow run ${GITHUB_WORKSPACE} -profile test_github,docker --outdir ./results
diff --git a/assets/test_github.yaml b/assets/test_github.yaml
@@ -1,13 +1,13 @@
 dataset:
   id: baUndUnlc1
   illumina_10X:
-    reads: /home/ubuntu/github/actions-runner/_work/genomeassembly/genomeassembly/Undibacterium_unclassified/genomic_data/baUndUnlc1/10x/
+    reads: /home/runner/work/genomeassembly/genomeassembly/Undibacterium_unclassified/genomic_data/baUndUnlc1/10x/
   pacbio:
     reads:
-      - reads: /home/ubuntu/github/actions-runner/_work/genomeassembly/genomeassembly/Undibacterium_unclassified/genomic_data/baUndUnlc1/pacbio/fasta/HiFi.reads.fasta
+      - reads: /home/runner/work/genomeassembly/genomeassembly/Undibacterium_unclassified/genomic_data/baUndUnlc1/pacbio/fasta/HiFi.reads.fasta
   HiC:
     reads:
-      - reads: /home/ubuntu/github/actions-runner/_work/genomeassembly/genomeassembly/Undibacterium_unclassified/genomic_data/baUndUnlc1/hic-arima2/41741_2#7.sub.cram
+      - reads: /home/runner/work/genomeassembly/genomeassembly/Undibacterium_unclassified/genomic_data/baUndUnlc1/hic-arima2/41741_2#7.sub.cram
 hic_motif: GATC,GANTC,CTNAG,TTAA
 busco:
   lineage: bacteria_odb10