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Integration Checks

Integration Checks #25

name: Integration Checks
# Because `main` is a protected branch this workflow is triggered when a PR
# is opened/updated and again when it is merged.
on:
push:
branches:
- main
pull_request:
branches:
- main
jobs:
check-package:
runs-on: ubuntu-latest
# Use the `satijalab/seurat-ci` Docker image as the runner environment.
# This image is pre-configured with everything required for running
# integration checks, for more details, see
# https://hub.docker.com/repository/docker/satijalab/seurat-ci/general.
container:
image: satijalab/seurat-ci:latest
steps:
# Pull the latest changes from the repository down to the runner.
- name: Checkout
uses: actions/checkout@v4
# Install the package and all its dependencies using scripts from
# `littler`, see https://eddelbuettel.github.io/littler/ for details.
# `Seurat` is listed under "Enhances" so it also needs to be installed.
- name: Install Dependencies
run: installDeps.r -s && install.r Seurat
# Run CRAN checks, if any ERRORs or WARNINGs are raised the check fails.
- name: Run Checks
run: rcmdcheck::rcmdcheck(args = "--as-cran", error_on="warning")
shell: Rscript {0}
continue-on-error: true
# Build the `pkgdown` site, if any errors are raised the check fails.
- name: Build Website
run: |
pkgdown::build_site_github_pages(
new_process = FALSE,
install = FALSE
)
shell: Rscript {0}