Tweak check-package after Docker image update

satijalab · Dec 5, 2024 · 7f9f214 · 7f9f214
1 parent 622368b
commit 7f9f214
Showing 1 changed file with 4 additions and 7 deletions.
diff --git a/.github/workflows/integration_checks.yaml b/.github/workflows/integration_checks.yaml
@@ -29,15 +29,12 @@ jobs:
 
       # Install the package and _all_ its dependencies.
       - name: Install Dependencies
-        run: installAllDeps.r
+        run: installDeps.r -s && install.r Seurat
 
-      # Run CRAN checks, if any ERRORs or WARNINGs are raised the check fails.
+      # Run CRAN checks, if any ERRORs or WARNINGs are raised the check fails
+      # and the output of `rcmdcheck` will be uploaded as an artifact.
       - name: Run Checks
-        run: |
-          rcmdcheck::rcmdcheck(
-            args = c("--as-cran"),
-            error_on="warning"
-          )
+        run: rcmdcheck::rcmdcheck(args = "--as-cran", error_on="warning")
         shell: Rscript {0}
         continue-on-error: true