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Hi, what is the best way to group cells by condition after integrating? I currently have two treatment groups which undergo standard QC processing (subset based on number of RNA reads and mitochondria levels) before I integrate them. After the integration process, I am having trouble deciphering which cells belong to the specific treatment group. I was using the object$groups function to group the cells, but I believe something is wrong with my grouping since there does not seem to be any difference in the cell numbers in the clusters. Thank you for the help!
The text was updated successfully, but these errors were encountered:
Hi, what is the best way to group cells by condition after integrating? I currently have two treatment groups which undergo standard QC processing (subset based on number of RNA reads and mitochondria levels) before I integrate them. After the integration process, I am having trouble deciphering which cells belong to the specific treatment group. I was using the object$groups function to group the cells, but I believe something is wrong with my grouping since there does not seem to be any difference in the cell numbers in the clusters. Thank you for the help!
The text was updated successfully, but these errors were encountered: