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332 Open 7,641 Closed
332 Open 7,641 Closed
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Issues list

How to extract the spatial coordinate from a Seurat object with Visium samples?
#9431 opened Oct 27, 2024 by HelloWorldLTY
Is it legitimate to RunUMAP on PCA after integration?
#9429 opened Oct 25, 2024 by weishwu
Should I run SCTranform on each demultiplexed sample individually?
#9428 opened Oct 25, 2024 by weishwu
v5 FindAllMarkers avg_log2FC values diverge from Wilcoxon results bug Something isn't working
#9426 opened Oct 25, 2024 by michael-r-odea
FeaturePlot arguments only applying to last plot with use of split.by function
#9425 opened Oct 24, 2024 by sadhnarao
1
Integration with SCT and impossibility to perform DEG on RNA assay documentation Error in documentation
#9424 opened Oct 24, 2024 by Behind42
CLR normalized ADT suitable for pseudobulk analysis
#9423 opened Oct 23, 2024 by tdfy
Error in FindNeighbors with dims set to NULL bug Something isn't working
#9420 opened Oct 22, 2024 by petrenkokate
1
Function "SelectIntegrationFeatures" For Which Data Assay?
#9418 opened Oct 22, 2024 by ForrestGump618
automatic batch correction with seurat v5 SCT on spatial data?
#9416 opened Oct 21, 2024 by mistrm82
FindSpatiallyVariableFeatures giving "Please provide the same number of observations as spatial locations" error bug Something isn't working
#9415 opened Oct 21, 2024 by elifozcelik
1
The difference between FindVariableFeatures and HVFInfo
#9414 opened Oct 21, 2024 by noranekonobokkusu
SplitObject of 10x Visium spatial Seurat Object retains all spatial images
#9413 opened Oct 21, 2024 by strawberry098
WhichCell() for marker names with dashes from ADT assay returned error of None of the requested variables were found, even when using backticks bug Something isn't working
#9411 opened Oct 20, 2024 by denvercal1234GitHub
1
What is the expected directory structure for Load10X_Spatial? Having issues importing Visium HD Data. bug Something isn't working
#9410 opened Oct 18, 2024 by kokodur
CCAIntegration Approach in IntegrateLayers does not use InterableMatrix from BPCells bug Something isn't working
#9408 opened Oct 17, 2024 by Victor21v
RAW DATA FOR PBMCs in Seurat V5
#9407 opened Oct 16, 2024 by singhd6
Reproducing scVI result in Seurat v5 vignette documentation Error in documentation
#9406 opened Oct 16, 2024 by shwong-tw
Banksy Code error: order(labels.loc[, id]) : argument 1 is not a vector bug Something isn't working
#9404 opened Oct 16, 2024 by salasd
2
Warning message: “package ‘Seurat’ was built under R version 4.3.2” documentation Error in documentation
#9402 opened Oct 15, 2024 by ASNbioinf
Scaling on Variable Features only and all Features yields different UMAP projections on subsampled or split data bug Something isn't working
#9401 opened Oct 15, 2024 by JurMich
Unable to reproduce tutorial - Seurat - Guided Clustering Tutorial
#9399 opened Oct 14, 2024 by holiday01
6
bug about the definetion of RowVarSparse in RunPCA bug Something isn't working
#9396 opened Oct 12, 2024 by NormalLomo
Unable to load visium HD data using seurat
#9394 opened Oct 12, 2024 by Yijia-Jiang
1
Help with grouping of cells after integration
#9393 opened Oct 11, 2024 by hparaiso
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