update docs

sccn · Mar 19, 2024 · 5a081c3 · 5a081c3
1 parent 63aed0b
commit 5a081c3
Showing 1 changed file with 6 additions and 1 deletion.
diff --git a/pop_roi_connect.m b/pop_roi_connect.m
@@ -29,7 +29,8 @@
 %                       'TRDTF' : Time-reversed directed transfer entropy
 %                       'MIM'   : Multivariate Interaction Measure for each ROI
 %                       'MIC'   : Maximized Imaginary Coherency for each ROI
-%                       'PAC'   : Phase-amplitude coupling between ROIs
+%                       'PAC'   : Phase-amplitude coupling between ROIs (see the 'fcomb' and 'bs_outopts' input parameters)
+%                       'TDE'   : Time-delay estimation between two selected ROIs (see the 'tde_regions' and 'tde_freqbands' input parameters)
 %  'snippet'        - ['on'|off]  Option to compute connectivity over snippets. Default is 'off'. 
 %  'firstsnippet'   - ['on'|off]  Only use the first snippet (useful for fast computation). Default is 'off'. 
 %  'snip_length'    - ['on'|'off'] Length of the snippets. Default is 60 seconds.
@@ -50,6 +51,10 @@
 %                          5 - only store: b_anti, b_anti_norm
 %  'roi_selection'  - [cell array of integers] Cell array of ROI indices {1, 2, 3, ...} indicating for which regions (ROIs) connectivity should be computed. 
 %                     Default is empty (in this case, connectivity will be computed for all ROIs).
+%  'tde_regions'    - [seed target] Array containing the seed and target region for time-delay estimation. Regions need to be passed as region *indices*, 
+%                     e.g., [2 10] will compute time-delays from region 2 -> 10 and 10 -> 2, corresponding to the information flow in both directions separately. 
+%                     Default is [] (will throw an error).
+%  'tde_freqbands'  - [f1 f2] Array containing the frequency band for which bispectral time-delays will be estimated. Default is [] (broadband).
 %  'conn_stats'     - ['on'|'off'] Run statistics on connectivity metrics. Default is 'off'.
 %  'nshuf'          - [integer] number of shuffles for statistical significance testing. The first shuffle is the true value. Default is 1001. 
 %  'freqrange'      - [min max] frequency range in Hz. This is used to compute and plot p-values. Default is to plot broadband power.