Add latest version - more content and add jupyter-book

.github/workflows/build_docs.yml

@@ -19,15 +19,30 @@ jobs:
       - name: Checkout
         uses: actions/checkout@v4
 
+
+      - name: Setup python
+        uses: actions/setup-python@v4
+        with:
+          python-version: '3.10'
+
+      - name: Install dependencies
+        run: |
+          python3 -m pip install .
+
+      - name: Build docs
+        run: jupyter book build .
+
       - name: Use Node v18
         uses: actions/setup-node@v4
         with:
           node-version: 18
 
       - name: Build slides
         run: |
-          npx @marp-team/marp-cli slides.md --html -o ${{ env.PUBLISH_DIR }}/index.html
-          cp figures/*.png ${{ env.PUBLISH_DIR }}/
+          for doc in $(ls docs/*.md); do
+            npx @marp-team/marp-cli ${doc} --html -o ${{ env.PUBLISH_DIR }}/$(basename ${doc::-3})-slides.html
+          done
+          cp -r docs/figures ${{ env.PUBLISH_DIR }}/
 
       - name: Upload artifact
         uses: actions/upload-artifact@v3

.gitignore

@@ -1 +1,2 @@
-slides.html
+.DS_Store
+*.html

_config.yml

@@ -0,0 +1,42 @@
+# Book settings
+# Learn more at https://jupyterbook.org/customize/config.html
+
+title: PhD Retreat 19.03.2024
+author: Henrik Finsberg
+logo: "docs/figures/logo.png"
+copyright: "2024"
+only_build_toc_files: true
+
+
+execute:
+  execute_notebooks: cache
+  timeout: 3000
+
+# Information about where the book exists on the web
+repository:
+  url: https://github.com/scientificcomputing/phd-retreat-190324 # Online location of your book
+  branch: main
+
+
+html:
+  use_issues_button: true
+  use_repository_button: true
+
+parse:
+  myst_enable_extensions:
+    - amsmath
+    - dollarmath
+    - linkify
+    - html_image
+
+sphinx:
+
+  config:
+    html_last_updated_fmt: "%b %d, %Y"
+
+  extra_extensions:
+  - 'sphinx.ext.autodoc'
+  - 'sphinx.ext.napoleon'
+  - 'sphinx.ext.viewcode'
+
+exclude_patterns: [".*/*"]

_toc.yml

@@ -0,0 +1,7 @@
+format: jb-article
+root: README
+
+sections:
+- file: docs/intro
+- file: docs/organizing
+- file: docs/recording-computations