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Expand Up @@ -351,7 +351,7 @@ will not work either.
interactive(children=(IntSlider(value=34, description='plane', max=59), Output()), _dom_classes=('widget-interact',))

<function explore_slices.<locals>.display_slice at 0x7f375be96700>
<function explore_slices.<locals>.display_slice at 0x7f734fd3dc60>



Expand Down Expand Up @@ -473,7 +473,7 @@ slices interactively.
interactive(children=(IntSlider(value=34, description='plane', max=59), Output()), _dom_classes=('widget-interact',))

<function explore_slices.<locals>.display_slice at 0x7f375c1804a0>
<function explore_slices.<locals>.display_slice at 0x7f734fced260>



Expand Down Expand Up @@ -584,7 +584,7 @@ Note that this works in a static HTML page!

.. rst-class:: sphx-glr-timing

**Total running time of the script:** (0 minutes 10.442 seconds)
**Total running time of the script:** (0 minutes 10.693 seconds)


.. _sphx_glr_download_auto_examples_applications_plot_3d_image_processing.py:
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Expand Up @@ -148,7 +148,7 @@ The `imshow` function can display both grayscale and RGB(A) 2D images.
Clipping input data to the valid range for imshow with RGB data ([0..1] for floats or [0..255] for integers). Got range [64..4095].
<matplotlib.image.AxesImage object at 0x7f10e0e162a0>
<matplotlib.image.AxesImage object at 0x7f74c6d0f890>
Expand Down Expand Up @@ -375,7 +375,7 @@ The biologist's eye can spot that the two bright blobs (best seen in
.. rst-class:: sphx-glr-timing

**Total running time of the script:** (0 minutes 14.765 seconds)
**Total running time of the script:** (0 minutes 12.774 seconds)


.. _sphx_glr_download_auto_examples_applications_plot_3d_interaction.py:
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Expand Up @@ -524,7 +524,7 @@ we would get the pancake situation.
.. rst-class:: sphx-glr-timing

**Total running time of the script:** (0 minutes 4.905 seconds)
**Total running time of the script:** (0 minutes 3.934 seconds)


.. _sphx_glr_download_auto_examples_applications_plot_3d_structure_tensor.py:
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Expand Up @@ -342,7 +342,7 @@ labeled individually.

.. rst-class:: sphx-glr-timing

**Total running time of the script:** (0 minutes 2.194 seconds)
**Total running time of the script:** (0 minutes 2.068 seconds)


.. _sphx_glr_download_auto_examples_applications_plot_coins_segmentation.py:
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Expand Up @@ -177,7 +177,7 @@ much lower than the overlap coefficient.
.. code-block:: none
np.float64(0.23949522288877872)
np.float64(0.21789158611037684)
Expand Down Expand Up @@ -281,7 +281,7 @@ would give us a good measure of how strong the association is.

.. code-block:: none
PCC: 0.822, p-val: 0
PCC: 0.881, p-val: 0
Expand Down Expand Up @@ -309,7 +309,7 @@ case.
.. rst-class:: sphx-glr-timing

**Total running time of the script:** (0 minutes 1.658 seconds)
**Total running time of the script:** (0 minutes 1.529 seconds)


.. _sphx_glr_download_auto_examples_applications_plot_colocalization_metrics.py:
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Expand Up @@ -492,7 +492,7 @@ the opening processing step, when removing fine-grained features.
.. rst-class:: sphx-glr-timing

**Total running time of the script:** (0 minutes 30.068 seconds)
**Total running time of the script:** (0 minutes 28.403 seconds)


.. _sphx_glr_download_auto_examples_applications_plot_cornea_spot_inpainting.py:
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Expand Up @@ -134,7 +134,7 @@ using `OpenCV train cascade utility
.. rst-class:: sphx-glr-timing

**Total running time of the script:** (0 minutes 0.446 seconds)
**Total running time of the script:** (0 minutes 0.495 seconds)


.. _sphx_glr_download_auto_examples_applications_plot_face_detection.py:
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Expand Up @@ -119,6 +119,9 @@ The dataset is a 2D image stack with 15 frames (time points) and 2 channels.
.. raw:: html
:file: images/sphx_glr_plot_fluorescence_nuclear_envelope_001.html




Expand Down Expand Up @@ -282,13 +285,13 @@ Let us visualize these processing steps in a sequence of subplots.
.. image-sg:: /auto_examples/applications/images/sphx_glr_plot_fluorescence_nuclear_envelope_001.png
.. image-sg:: /auto_examples/applications/images/sphx_glr_plot_fluorescence_nuclear_envelope_002.png
:alt: a) Raw, b) Blur, c) Threshold, c-1) Fill in, c-2) Keep one nucleus, d) Dilate, e) Erode, f) Nucleus Rim
:srcset: /auto_examples/applications/images/sphx_glr_plot_fluorescence_nuclear_envelope_001.png
:srcset: /auto_examples/applications/images/sphx_glr_plot_fluorescence_nuclear_envelope_002.png
:class: sphx-glr-single-img

.. raw:: html
:file: images/sphx_glr_plot_fluorescence_nuclear_envelope_002.html
:file: images/sphx_glr_plot_fluorescence_nuclear_envelope_003.html



Expand Down Expand Up @@ -324,9 +327,9 @@ it as a mask to measure the intensity in the second channel.
.. image-sg:: /auto_examples/applications/images/sphx_glr_plot_fluorescence_nuclear_envelope_003.png
.. image-sg:: /auto_examples/applications/images/sphx_glr_plot_fluorescence_nuclear_envelope_004.png
:alt: Second channel (raw), Selection
:srcset: /auto_examples/applications/images/sphx_glr_plot_fluorescence_nuclear_envelope_003.png
:srcset: /auto_examples/applications/images/sphx_glr_plot_fluorescence_nuclear_envelope_004.png
:class: sphx-glr-single-img


Expand Down Expand Up @@ -597,9 +600,9 @@ regions.
.. image-sg:: /auto_examples/applications/images/sphx_glr_plot_fluorescence_nuclear_envelope_004.png
.. image-sg:: /auto_examples/applications/images/sphx_glr_plot_fluorescence_nuclear_envelope_005.png
:alt: Change in fluorescence intensity at the nuclear envelope
:srcset: /auto_examples/applications/images/sphx_glr_plot_fluorescence_nuclear_envelope_004.png
:srcset: /auto_examples/applications/images/sphx_glr_plot_fluorescence_nuclear_envelope_005.png
:class: sphx-glr-single-img


Expand All @@ -615,7 +618,7 @@ time points, and then becomes roughly constant.

.. rst-class:: sphx-glr-timing

**Total running time of the script:** (0 minutes 2.663 seconds)
**Total running time of the script:** (0 minutes 2.622 seconds)


.. _sphx_glr_download_auto_examples_applications_plot_fluorescence_nuclear_envelope.py:
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Expand Up @@ -282,15 +282,15 @@ Once the features are extracted, we can train and test a new classifier.

.. code-block:: none
Computing the full feature set took 55.546s, plus 2.791s training, for an AUC of 1.00. Computing the restricted feature set took 0.099s, plus 1.620s training, for an AUC of 1.00.
Computing the full feature set took 43.027s, plus 2.623s training, for an AUC of 1.00. Computing the restricted feature set took 0.166s, plus 2.257s training, for an AUC of 1.00.
.. rst-class:: sphx-glr-timing

**Total running time of the script:** (1 minutes 3.347 seconds)
**Total running time of the script:** (0 minutes 51.659 seconds)


.. _sphx_glr_download_auto_examples_applications_plot_haar_extraction_selection_classification.py:
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Expand Up @@ -522,7 +522,7 @@ cells in this sample. Therefore, we estimate the mitotic index to be:
.. rst-class:: sphx-glr-timing

**Total running time of the script:** (0 minutes 3.696 seconds)
**Total running time of the script:** (0 minutes 2.846 seconds)


.. _sphx_glr_download_auto_examples_applications_plot_human_mitosis.py:
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Expand Up @@ -192,7 +192,7 @@ Blend

.. rst-class:: sphx-glr-timing

**Total running time of the script:** (0 minutes 2.658 seconds)
**Total running time of the script:** (0 minutes 2.708 seconds)


.. _sphx_glr_download_auto_examples_applications_plot_image_comparison.py:
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Expand Up @@ -70,7 +70,7 @@ functions only work on gray-scale or binary images, so we set ``as_gray=True``.
.. code-block:: none
<matplotlib.image.AxesImage object at 0x7f37596b0740>
<matplotlib.image.AxesImage object at 0x7f7352c97b60>
Expand Down Expand Up @@ -464,7 +464,7 @@ Additional Resources
.. rst-class:: sphx-glr-timing

**Total running time of the script:** (0 minutes 2.268 seconds)
**Total running time of the script:** (0 minutes 2.151 seconds)


.. _sphx_glr_download_auto_examples_applications_plot_morphology.py:
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Expand Up @@ -199,7 +199,7 @@ to the position of the centroid!

.. rst-class:: sphx-glr-timing

**Total running time of the script:** (1 minutes 18.749 seconds)
**Total running time of the script:** (1 minutes 23.004 seconds)


.. _sphx_glr_download_auto_examples_applications_plot_pixel_graphs.py:
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Expand Up @@ -1104,7 +1104,7 @@ on increasing image size:

.. rst-class:: sphx-glr-timing

**Total running time of the script:** (0 minutes 54.074 seconds)
**Total running time of the script:** (0 minutes 49.887 seconds)


.. _sphx_glr_download_auto_examples_applications_plot_rank_filters.py:
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Original file line number Diff line number Diff line change
Expand Up @@ -99,6 +99,9 @@ exist in roughly the same position from one frame to the next.
.. raw:: html
:file: images/sphx_glr_plot_solidification_tracking_001.html




Expand Down Expand Up @@ -134,7 +137,7 @@ at the second frame.
.. raw:: html
:file: images/sphx_glr_plot_solidification_tracking_001.html
:file: images/sphx_glr_plot_solidification_tracking_002.html



Expand Down Expand Up @@ -172,7 +175,7 @@ the intensity values to [0, 1].
.. raw:: html
:file: images/sphx_glr_plot_solidification_tracking_002.html
:file: images/sphx_glr_plot_solidification_tracking_003.html



Expand Down Expand Up @@ -207,7 +210,7 @@ noise beyond the interface.
.. raw:: html
:file: images/sphx_glr_plot_solidification_tracking_003.html
:file: images/sphx_glr_plot_solidification_tracking_004.html



Expand Down Expand Up @@ -248,7 +251,7 @@ methods that may work better for different applications).
.. raw:: html
:file: images/sphx_glr_plot_solidification_tracking_004.html
:file: images/sphx_glr_plot_solidification_tracking_005.html



Expand Down Expand Up @@ -392,7 +395,7 @@ along with its bounding box (bbox) in red.
.. raw:: html
:file: images/sphx_glr_plot_solidification_tracking_005.html
:file: images/sphx_glr_plot_solidification_tracking_006.html



Expand Down Expand Up @@ -420,7 +423,7 @@ in time (0th image) because the interface is moving upward.
.. raw:: html
:file: images/sphx_glr_plot_solidification_tracking_006.html
:file: images/sphx_glr_plot_solidification_tracking_007.html



Expand Down Expand Up @@ -459,9 +462,6 @@ position of the S-L interface.
.. raw:: html
:file: images/sphx_glr_plot_solidification_tracking_007.html

Expand Down Expand Up @@ -512,7 +512,7 @@ polynomial to the scatter plot. The velocity is the first-order coefficient.

.. rst-class:: sphx-glr-timing

**Total running time of the script:** (0 minutes 4.167 seconds)
**Total running time of the script:** (0 minutes 4.204 seconds)


.. _sphx_glr_download_auto_examples_applications_plot_solidification_tracking.py:
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2 changes: 1 addition & 1 deletion dev/_sources/auto_examples/applications/plot_text.rst.txt
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Expand Up @@ -83,7 +83,7 @@ just wants to write onto the image, this step is not necessary.

.. rst-class:: sphx-glr-timing

**Total running time of the script:** (0 minutes 0.945 seconds)
**Total running time of the script:** (0 minutes 0.949 seconds)


.. _sphx_glr_download_auto_examples_applications_plot_text.py:
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Expand Up @@ -173,9 +173,6 @@ repeatedly until there are only two peaks in the histogram.
:srcset: /auto_examples/applications/images/sphx_glr_plot_thresholding_guide_003.png
:class: sphx-glr-single-img

.. raw:: html
:file: images/sphx_glr_plot_thresholding_guide_004.html




Expand Down Expand Up @@ -220,9 +217,9 @@ the intra-class variance.
.. image-sg:: /auto_examples/applications/images/sphx_glr_plot_thresholding_guide_005.png
.. image-sg:: /auto_examples/applications/images/sphx_glr_plot_thresholding_guide_004.png
:alt: Original, Histogram, Thresholded
:srcset: /auto_examples/applications/images/sphx_glr_plot_thresholding_guide_005.png
:srcset: /auto_examples/applications/images/sphx_glr_plot_thresholding_guide_004.png
:class: sphx-glr-single-img


Expand Down Expand Up @@ -284,9 +281,9 @@ of the local neighborhood minus an offset value.
.. image-sg:: /auto_examples/applications/images/sphx_glr_plot_thresholding_guide_006.png
.. image-sg:: /auto_examples/applications/images/sphx_glr_plot_thresholding_guide_005.png
:alt: Original, Global thresholding, Local thresholding
:srcset: /auto_examples/applications/images/sphx_glr_plot_thresholding_guide_006.png
:srcset: /auto_examples/applications/images/sphx_glr_plot_thresholding_guide_005.png
:class: sphx-glr-single-img


Expand Down Expand Up @@ -348,9 +345,9 @@ The example compares the local threshold with the global threshold.
.. image-sg:: /auto_examples/applications/images/sphx_glr_plot_thresholding_guide_007.png
.. image-sg:: /auto_examples/applications/images/sphx_glr_plot_thresholding_guide_006.png
:alt: Original, Local Otsu (radius=15), Original >= Local Otsu, Global Otsu (threshold = {threshold_global_otsu})
:srcset: /auto_examples/applications/images/sphx_glr_plot_thresholding_guide_007.png
:srcset: /auto_examples/applications/images/sphx_glr_plot_thresholding_guide_006.png
:class: sphx-glr-single-img


Expand All @@ -360,7 +357,7 @@ The example compares the local threshold with the global threshold.

.. rst-class:: sphx-glr-timing

**Total running time of the script:** (0 minutes 4.861 seconds)
**Total running time of the script:** (0 minutes 4.564 seconds)


.. _sphx_glr_download_auto_examples_applications_plot_thresholding_guide.py:
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