Use niftiMD5SUM

scilus · Sep 8, 2024 · 736caaf · 736caaf
1 parent 6230a0d
commit 736caaf
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Showing 4 changed files with 93 additions and 663 deletions.
diff --git a/subworkflows/nf-scil/preproc_t1/main.nf b/subworkflows/nf-scil/preproc_t1/main.nf
@@ -79,7 +79,7 @@ workflow PREPROC_T1 {
         image_bet       = image_bet                              // channel: [ val(meta), [ t1 ] ]
         mask_bet        = mask_bet                               // channel: [ val(meta), [ mask ] ]
         crop_box        = BETCROP_CROPVOLUME_T1.out.bounding_box // channel: [ val(meta), [ bounding_box ] ]
-        mask_final      = BETCROP_CROPVOLUME_MASK.out.image      // channel: [ val(meta), [ mask ] ]
+        mask_final      = BETCROP_CROPVOLUME_MASK.out.image      // channel: [ val(meta), [ image ] ]
         t1_final        = BETCROP_CROPVOLUME_T1.out.image        // channel: [ val(meta), [ image ] ]
         versions        = ch_versions                            // channel: [ versions.yml ]
 }
diff --git a/subworkflows/nf-scil/preproc_t1/tests/main.nf.test b/subworkflows/nf-scil/preproc_t1/tests/main.nf.test
@@ -82,7 +82,17 @@ nextflow_workflow {
         then {
             assertAll(
                 { assert workflow.success},
-                { assert snapshot(workflow.out).match()}
+                { assert snapshot(
+                    niftiMD5SUM(workflow.out.image_nlmeans.get(0).get(1)),
+                    niftiMD5SUM(workflow.out.image_N4.get(0).get(1)),
+                    niftiMD5SUM(workflow.out.image_resample.get(0).get(1)),
+                    niftiMD5SUM(workflow.out.image_bet.get(0).get(1)),
+                    niftiMD5SUM(workflow.out.mask_bet.get(0).get(1)),
+                    file(workflow.out.crop_box.get(0).get(1)),
+                    niftiMD5SUM(workflow.out.mask_final.get(0).get(1)),
+                    niftiMD5SUM(workflow.out.t1_final.get(0).get(1)),
+                    workflow.out.versions
+                ).match()}
             )
         }
     }
@@ -141,7 +151,17 @@ nextflow_workflow {
         then {
             assertAll(
                 { assert workflow.success},
-                { assert snapshot(workflow.out).match()}
+                { assert snapshot(
+                    niftiMD5SUM(workflow.out.image_nlmeans.get(0).get(1)),
+                    niftiMD5SUM(workflow.out.image_N4.get(0).get(1)),
+                    niftiMD5SUM(workflow.out.image_resample.get(0).get(1)),
+                    niftiMD5SUM(workflow.out.image_bet.get(0).get(1)),
+                    niftiMD5SUM(workflow.out.mask_bet.get(0).get(1)),
+                    workflow.out.crop_box,
+                    niftiMD5SUM(workflow.out.mask_final.get(0).get(1)),
+                    niftiMD5SUM(workflow.out.t1_final.get(0).get(1)),
+                    workflow.out.versions
+                ).match()}
             )
         }
     }
@@ -200,7 +220,17 @@ test("preproc_t1_surgery") {
         then {
             assertAll(
                 { assert workflow.success},
-                { assert snapshot(workflow.out).match()}
+                { assert snapshot(
+                    niftiMD5SUM(workflow.out.image_nlmeans.get(0).get(1)),
+                    niftiMD5SUM(workflow.out.image_N4.get(0).get(1)),
+                    niftiMD5SUM(workflow.out.image_resample.get(0).get(1)),
+                    niftiMD5SUM(workflow.out.image_bet.get(0).get(1)),
+                    niftiMD5SUM(workflow.out.mask_bet.get(0).get(1)),
+                    file(workflow.out.crop_box.get(0).get(1)),
+                    niftiMD5SUM(workflow.out.mask_final.get(0).get(1)),
+                    niftiMD5SUM(workflow.out.t1_final.get(0).get(1)),
+                    workflow.out.versions
+                ).match()}
             )
         }
     }