Assign Transformation matrix to odd and even with a binning

[Vilax]

Consider that we have carried out a odd-even splitting with motioncorr.
MotionCor -> fullTS, oddTS, evenTS

Then a binning to the fullTS is carried out and aligned:

fullTS -> fullTS_binned -> fullTS_binned_aligned

Now we want to applied the alignment of fullTS_binned_aligned to the oddTS. Then the transformation is not well applied, the shifts seems to be properly set. This issue can be related with this one:

scipion-em/scipion-em-imod#155

The solution is to bin oddTS, evenTS and then to assign the transformation matrix to the binned TSodd and even

[pconesa]

@Vilax has this been addressed in the last even/ood changes?

[Vilax]

@pconesa this is the old way to deal with odd-even tilt series. the modification that we introduced to deal with odd-even TS is a simpler way. But the old way is still an alternative.

The issue should be still present. It is an old issue, I would check first if it still exists. I can try it, but I am overloaded in the next days. I will let you know

[azazellochg]

Hi @Vilax
I've run the workflow you suggested and assigned alignment from fullTS_binned_aligned to oddTS from motioncor (bin1). I can see in the output matrix the shifts are scaled properly. Not sure where is the problem..