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@scipion-em

scipion-em

Official repository for Scipion plugins

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  1. scipion-pyworkflow scipion-pyworkflow Public

    Underlying pyworkflow module for the Scipion framework

    Python 6 5

  2. scipion-em scipion-em Public

    Base Scipion plugin defining objects and protocols for EM

    Python 9 5

  3. scipion-app scipion-app Public

    Base Scipion application that is based on pyworkflow and all extension plugins

    Python 7 2

  4. scipion-installer scipion-installer Public

    Scipion app installer for version 3. Compatible with python2 and python3. It creates virtualenv or conda environments.

    Python 3 2

  5. docs docs Public

    Scipion documentation repository

    Python 1 7

  6. scipion-em-tomo scipion-em-tomo Public

    Base tomography Scipion plugin with data model definition

    Python 9 5

Repositories

Showing 10 of 111 repositories
  • scipion-em-imod Public

    Plugin to use some of the Tomography tools from IMOD in Scipion

    scipion-em/scipion-em-imod’s past year of commit activity
    Python 2 GPL-3.0 2 18 (1 issue needs help) 2 Updated Mar 21, 2025
  • scipion-em Public

    Base Scipion plugin defining objects and protocols for EM

    scipion-em/scipion-em’s past year of commit activity
    Python 9 GPL-3.0 5 22 (1 issue needs help) 1 Updated Mar 21, 2025
  • metadata-viewer Public

    Generic metadata viewer

    scipion-em/metadata-viewer’s past year of commit activity
    Python 0 GPL-3.0 0 3 0 Updated Mar 20, 2025
  • scipion-em-tomo Public

    Base tomography Scipion plugin with data model definition

    scipion-em/scipion-em-tomo’s past year of commit activity
    Python 9 GPL-3.0 5 38 (1 issue needs help) 0 Updated Mar 20, 2025
  • scipion-pyworkflow Public

    Underlying pyworkflow module for the Scipion framework

    scipion-em/scipion-pyworkflow’s past year of commit activity
    Python 6 GPL-3.0 5 37 (1 issue needs help) 2 Updated Mar 20, 2025
  • scipion-em-warp Public

    Plugin to use Warp programs within the Scipion framework

    scipion-em/scipion-em-warp’s past year of commit activity
    Python 0 GPL-3.0 0 0 1 Updated Mar 20, 2025
  • scipion-em-topaz Public

    Scipion plugin to integrate Topaz particle picker

    scipion-em/scipion-em-topaz’s past year of commit activity
    Python 0 GPL-3.0 0 2 0 Updated Mar 20, 2025
  • scipion-em-emantomo Public

    Plugin to use Eman2 tomography programs within the Scipion framework

    scipion-em/scipion-em-emantomo’s past year of commit activity
    Python 2 GPL-3.0 0 6 0 Updated Mar 20, 2025
  • docs Public

    Scipion documentation repository

    scipion-em/docs’s past year of commit activity
    Python 1 GPL-3.0 7 2 2 Updated Mar 20, 2025
  • scipion-em-reliontomo Public

    Plugin to use Relion tomography programs within the Scipion framework

    scipion-em/scipion-em-reliontomo’s past year of commit activity
    Python 1 GPL-3.0 1 5 0 Updated Mar 19, 2025
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