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    107 repositories

    • scipion-em-smartscope

      Public
      Plugin to manage the interaction with the SmartScope framework.
      Python
      •
      GNU General Public License v3.0
      •0•4•1•0•Updated Oct 28, 2024Oct 28, 2024

    • scipion-em-pyseg

      Public
      Plugin to use PySeg programs within the Scipion framework
      tomo
      Python
      •
      GNU General Public License v3.0
      •0•2•9•0•Updated Oct 28, 2024Oct 28, 2024

    • scipion-em-topaz

      Public
      Scipion plugin to integrate Topaz particle picker
      spa
      Python
      •
      GNU General Public License v3.0
      •0•0•2•1•Updated Oct 28, 2024Oct 28, 2024

    • scipion-em-warp

      Public
      Plugin to use Warp programs within the Scipion framework
      spatomo
      Python
      •
      GNU General Public License v3.0
      •0•0•1•1•Updated Oct 28, 2024Oct 28, 2024

    • scipion-em-flexutils

      Public
      Python
      •
      GNU General Public License v3.0
      •0•0•2•1•Updated Oct 28, 2024Oct 28, 2024

    • scipion-em-tomo

      Public
      Base tomography Scipion plugin with data model definition
      tomo
      Python
      •
      GNU General Public License v3.0
      •4•8•37•3•Updated Oct 28, 2024Oct 28, 2024

    • scipion-em-aretomo

      Public
      Plugin to use AreTomo within the Scipion framework
      tomo
      Python
      •
      GNU General Public License v3.0
      •0•2•4•2•Updated Oct 28, 2024Oct 28, 2024

    • scipion-em-tomosegmemtv

      Public
      Scipion plugin for segmentation and annotation of membranes (with tomoSegmenTV and membSegAnnotator)
      tomo
      Python
      •
      GNU General Public License v3.0
      •0•3•2•0•Updated Oct 25, 2024Oct 25, 2024

    • scipion-pyworkflow

      Public
      Underlying pyworkflow module for the Scipion framework
      core
      Python
      •
      GNU General Public License v3.0
      •5•6•36•1•Updated Oct 25, 2024Oct 25, 2024

    • scipion-em

      Public
      Base Scipion plugin defining objects and protocols for EM
      spacoretomo
      Python
      •
      GNU General Public License v3.0
      •5•8•19•1•Updated Oct 25, 2024Oct 25, 2024

    • scipion-em-roodmus

      Public
      Python
      •
      GNU General Public License v3.0
      •0•0•0•0•Updated Oct 25, 2024Oct 25, 2024

    • scipion-em-tomo3d

      Public
      Plugin for the software of Jose Jesus Fernandez
      tomo
      Python
      •
      GNU General Public License v3.0
      •0•0•4•1•Updated Oct 24, 2024Oct 24, 2024

    • scipion-em-imod

      Public
      Plugin to use some of the Tomography tools from IMOD in Scipion
      tomo
      Python
      •
      GNU General Public License v3.0
      •2•1•15•0•Updated Oct 24, 2024Oct 24, 2024

    • scipion-em-relion

      Public
      Plugin to use Relion SPA programs within the Scipion framework
      spa
      Python
      •
      GNU General Public License v3.0
      •0•3•21•1•Updated Oct 24, 2024Oct 24, 2024

    • scipion-em-cistem

      Public
      Plugin to use cisTEM programs within the Scipion framework
      spatomo
      Python
      •
      GNU General Public License v3.0
      •4•1•1•0•Updated Oct 24, 2024Oct 24, 2024

    • docs

      Public
      Scipion documentation repository
      other
      Python
      •
      GNU General Public License v3.0
      •7•1•2•2•Updated Oct 22, 2024Oct 22, 2024

    • scipion-em-novactf

      Public
      Plugin to use NovaCTF in scipion
      tomo
      Python
      •
      GNU General Public License v3.0
      •0•1•1•0•Updated Oct 19, 2024Oct 19, 2024

    • scipion-em-gautomatch

      Public
      Plugin to use Gautomatch program within the Scipion framework
      spa
      Python
      •
      GNU General Public License v3.0
      •0•2•1•0•Updated Oct 19, 2024Oct 19, 2024

    • scipion-em-tomotwin

      Public
      Plugin to use TomoTwin within the Scipion framework
      tomo
      Python
      •
      GNU General Public License v3.0
      •0•1•0•0•Updated Oct 19, 2024Oct 19, 2024

    • scipion-em-membrain

      Public
      Plugin to run MemBrain software within Scipion
      tomosegmentationmembranescryo-et
      Python
      •
      GNU General Public License v3.0
      •0•0•0•0•Updated Oct 18, 2024Oct 18, 2024

    • scipion-em-reliontomo

      Public
      Plugin to use Relion tomography programs within the Scipion framework
      tomo
      Python
      •
      GNU General Public License v3.0
      •1•1•4•0•Updated Oct 17, 2024Oct 17, 2024

    • scipion-app

      Public
      Base Scipion application that is based on pyworkflow and all extension plugins
      core
      Python
      •
      GNU General Public License v3.0
      •2•7•8•1•Updated Oct 16, 2024Oct 16, 2024

    • scipion-em-emantomo

      Public
      Plugin to use Eman2 tomography programs within the Scipion framework
      tomo
      Python
      •
      GNU General Public License v3.0
      •0•2•6•0•Updated Oct 16, 2024Oct 16, 2024

    • scipion-em-dynamo

      Public
      Dynamo tomography plugin for Scipion
      tomo
      Python
      •
      GNU General Public License v3.0
      •0•1•4•0•Updated Oct 16, 2024Oct 16, 2024

    • scipion-em-empiar

      Public
      A Scipion plugin to make depositions to EMPIAR
      other
      Python
      •
      GNU General Public License v3.0
      •1•1•1•0•Updated Oct 16, 2024Oct 16, 2024

    • scipion-em-sphire

      Public
      Plugin to use Sphire programs within the Scipion framework
      spatomo
      Python
      •
      GNU General Public License v3.0
      •1•0•1•1•Updated Oct 15, 2024Oct 15, 2024

    • scipion-em-facilities

      Public
      Plugin for Cryo-EM facilities to be used within Scipion framework
      other
      Python
      •
      GNU General Public License v3.0
      •1•0•6•3•Updated Oct 15, 2024Oct 15, 2024

    • scipion-em-cryosparc2

      Public
      Plugin to use cryoSPARC2 programs within the Scipion framework
      spa
      Python
      •
      GNU General Public License v3.0
      •0•2•6•0•Updated Oct 11, 2024Oct 11, 2024

    • scipion-em-reweighting

      Public
      scipion plugin for ensemble reweighting
      Python
      •
      GNU General Public License v3.0
      •0•1•0•0•Updated Oct 11, 2024Oct 11, 2024

    • scipion-em-locscale

      Public
      Plugin to use Locscale programs within the Scipion framework
      Python
      •
      GNU General Public License v3.0
      •0•0•0•0•Updated Oct 8, 2024Oct 8, 2024