Pymol ScrIpt COllection (PSICO)

DESCRIPTION

    "psico" is a python module which extends PyMOL, a molecular visualization
    tool (http://pymol.org).

DOCUMENTATION

    http://pymolwiki.org/index.php/psico

    https://github.com/speleo3/pymol-psico

    A reference document with all commands can be generated with:
    PyMOL> psico.helping.write_html_ref('psico-commands.html')

INSTALLATION

    (1) Use the setup.py script, or just copy the "psico" directory to
        PYTHONPATH (for example /path/to/pymol-xxx/modules/).

    (2) Add to your ~/.pymolrc.py file (or just enter into the PyMOL command
        line):

        import psico.fullinit

EXTERNAL PROGRAMS AND LIBRARIES

    Some functions in psico require the following python modules:

     * numpy
     * Bio (biopython)
     * MMTK
     * csb (http://csb.codeplex.com)
     * modeller
     * prody

    psico has several wrappers for external tools. For full support, you need
    these binaries:

     * dssp (recommended)
     * stride (recommended)
     * TMalign (recommended)
     * TMscore
     * MMalign
     * theseus (recommended)
     * needle (recommended)
     * DynDom
     * qdelaunay
     * mencoder
     * pdbmat
     * diagrtb
     * apbs
     * pdb2pqr
     * prosmart
     * p_sstruc3

AUTHORS

    Thomas Holder (1,2) <[email protected]>
    Steffen Schmidt (1) <[email protected]>

    (1) Max Planck Institute for Developmental Biology, Germany
    (2) Warren L. DeLano Memorial PyMOL Open-Source Fellowship 2011-2012

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