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Fix formatting
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valosekj committed Sep 18, 2024
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Expand Up @@ -262,6 +262,7 @@ Usage:
./process_data.sh -d <dicom folder> -b <bids folder> -r <results folder> -p <participant id> -s <session id> -c <contrasts> [-age <age> -sex <sex>]
```

```
MANDATORY ARGUMENTS
-d <dicom folder> Path to the folder containing DICOM images. Example: ~/sci-balgrist-study/sourcedata/dir_20230711
-b <bids folder> Path to the BIDS folder where the converted NIfTI images will be stored. Example: ~/sci-balgrist-study/bids
Expand All @@ -273,7 +274,7 @@ MANDATORY ARGUMENTS
OPTIONAL ARGUMENTS
-a <age> Age of the subject at the time of the MRI scan. The provided value will be stored to participants.tsv file. Example: 25. Default: n/a
-x <sex> Sex of the subject. The provided value will be stored to participants.tsv file. Example: M. Default: n/a

```

Example:

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