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First prototype of processing script#4

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jcohenadad wants to merge 7 commits intomainsct-pipeline/critical-ms-lesion:mainfrom jca/3-prototypesct-pipeline/critical-ms-lesion:jca/3-prototypeCopy head branch name to clipboard

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Commits on Nov 13, 2024

• First prototype of processing script

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  jcohenadad

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  7832087

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• Fixed wrong use of file for seg labels

  jcohenadad

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  8510ef7

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Commits on Nov 20, 2024

• added lesion segmentation in script

  plbenveniste

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• fixed lesion segmentation and added lesion analysis

  plbenveniste

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Commits on Nov 21, 2024

• removed QC in sct_process_segmentation

  plbenveniste

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Commits on Nov 22, 2024

• added PAM-50 normalization of CSA

  plbenveniste

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  028b073

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• added initial script to detect atrophy in the spinal cord

  plbenveniste

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