v0.1.4

- Bump version
- Add changelog
- Fix tests for new AnnData dtype behaviour

docs/source/changelog.rst

@@ -9,6 +9,24 @@ Release notes
 
    *
 
+v0.1.4
+------
+
+This release comes with improvements and fixes:
+
+* :func:`muon.pp.intersect_obs` now works for modalities that have no ``.X``
+
+* :func:`muon.pl.embedding` now saves the colour palette in ``.uns``
+
+* :func:`muon.atac.pl.fragment_histogram` and :func:`muon.pl.histogram` now have save/show arguments
+
+* :func:`muon.atac.tl.count_fragments_features` now has a ``stranded`` argument
+
+* :func:`muon.atac.tl.nucleosome_signal` now works on more ``pysam`` setups
+
+* support for numpy 1.24 and newer scanpy versions
+
+
 v0.1.3
 ------
 

muon/__init__.py

@@ -13,4 +13,4 @@
 from . import atac
 from . import prot
 
-__version__ = "0.1.3"
+__version__ = "0.1.4"

tests/test_atac_preproc.py

@@ -11,7 +11,7 @@ class TestTFIDF(unittest.TestCase):
     def setUp(self):
         np.random.seed(2020)
         x = np.abs(np.random.normal(size=(4, 5)))
-        self.adata = AnnData(x)
+        self.adata = AnnData(x, dtype=x.dtype)
 
     def test_tfidf(self):
         adata = self.adata.copy()
@@ -49,11 +49,11 @@ class TestTFIDFSparse(unittest.TestCase):
     def setUp(self):
         np.random.seed(2020)
         x = rand(100, 10, density=0.2, format="csr")
-        self.adata = AnnData(x)
+        self.adata = AnnData(x, dtype=x.dtype)
 
     def test_tfidf(self):
         ac.pp.tfidf(self.adata, log_tf=True, log_idf=True)
-        self.assertEqual(str("%.3f" % self.adata.X[10, 9]), "18.748")
+        self.assertEqual(str("%.3f" % self.adata.X[10, 9]), "18.749")
         self.assertEqual(str("%.3f" % self.adata.X[50, 5]), "0.000")