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499 Open 1,308 Closed
499 Open 1,308 Closed
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Issues list

dask sparse PCA dtype Triage 🩺 This issue needs to be triaged by a maintainer
#3487 opened Feb 26, 2025 by ilan-gold
3 tasks done
Exporting rankgenegroups to pandas dataframes Triage 🩺 This issue needs to be triaged by a maintainer
#3486 opened Feb 26, 2025 by Fougere87
Adding 'max_iter_harmony' arguement into external.pp.harmony_integrate Triage 🩺 This issue needs to be triaged by a maintainer
#3480 opened Feb 24, 2025 by shihsama
GLIBCXX_3.4.30 not being imported from miniconda enviroment Triage 🩺 This issue needs to be triaged by a maintainer
#3479 opened Feb 22, 2025 by dm8000
2 of 3 tasks
[Question]: Usage of Graph Algorithms and Any Slowdowns?
#3476 opened Feb 20, 2025 by nv-rliu
3
'ingest' on scvi-batch corrected reference? Needs info❔ More information needed
#3469 opened Feb 17, 2025 by ShuonanChen
2
Scanpy doesn't identify markers in marker genes dict but does as a string Triage 🩺 This issue needs to be triaged by a maintainer
#3468 opened Feb 17, 2025 by jcshuy
1 of 3 tasks
converting strings to categoricals Triage 🩺 This issue needs to be triaged by a maintainer
#3467 opened Feb 17, 2025 by wangjiawen2013
Add support for backed mode in calculate_qc_metrics
#3464 opened Feb 12, 2025 by milos7250
2
Plot violin throws error when trying to change density argument
#3458 opened Feb 5, 2025 by LinearParadox
3 tasks done
@flying-sheep
mean expression in group for plotting functions Triage 🩺 This issue needs to be triaged by a maintainer
#3454 opened Jan 28, 2025 by davidrm-bio
2 of 3 tasks
feature selection method using pearson residuals discrepancies Triage 🩺 This issue needs to be triaged by a maintainer
#3452 opened Jan 24, 2025 by jflucier
2 of 3 tasks
1
fast array utils spinoff package Area – API API design Meta A meta-request to be implemented in multiple steps
#3449 opened Jan 23, 2025 by flying-sheep
2 of 5 tasks
@flying-sheep @Intron7
6
AttributeError: 'Series' object has no attribute 'nonzero' in sc.tl.filter_rank_genes_groups Needs info❔ More information needed
#3443 opened Jan 19, 2025 by niuniudevp
2 of 3 tasks
6
UMAP redesign Area - Topology 🍩 Neighbor graphs Area – API API design Meta A meta-request to be implemented in multiple steps
#3429 opened Jan 9, 2025 by flying-sheep
Support for scipy.csr_array/scipy.csc_array
#3423 opened Jan 1, 2025 by alam-shahul
2 of 3 tasks
1.12.0
4
UMAP implementation in igraph
#3408 opened Dec 18, 2024 by iosonofabio
@ricor07
3
Allow both 'on data' legend together with legend on righ-hand side of plot Area - Plotting 🌺 Area – API API design
#3401 opened Dec 13, 2024 by mumichae
1
mask_obs parameter modifies obs column when calling scatterplot Area - Plotting 🌺
#3400 opened Dec 13, 2024 by mumichae
3 tasks done
1
"Interactive" Dotplot version: check for available var_names Area - Plotting 🌺
#3387 opened Nov 25, 2024 by FrancescaDr
1
1
Difference between tl.rank_genes_groups and pl.rank_genes_groups_heatmap
#3378 opened Nov 20, 2024 by LioLenr
Nan values after running sc.tl.filter_rank_genes_groups and plotting
#3374 opened Nov 18, 2024 by shreyii
1
Switch to numpy.random.Generator Area – Reproducibility Exact replication Meta A meta-request to be implemented in multiple steps
#3371 opened Nov 18, 2024 by flying-sheep
2 of 3 tasks
sc.pl.heatmap var_names function KeyError
#3363 opened Nov 13, 2024 by josenimo
3 tasks done
2
I started using scanny to read in data, but I always got the following error. I can't find any other detailed reasons.
#3355 opened Nov 12, 2024 by xzt199610
ProTip! Adding no:label will show everything without a label.