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Investigate SquidPy tools used in scRNAseq-only analyses #3137

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flying-sheep opened this issue Jul 2, 2024 · 2 comments
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Investigate SquidPy tools used in scRNAseq-only analyses #3137

flying-sheep opened this issue Jul 2, 2024 · 2 comments
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@Intron7
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@flying-sheep
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What kind of feature would you like to request?

New analysis tool: A simple analysis tool you have been using and are missing in sc.tools?

Please describe your wishes

LigRec and so on

cc @Intron7
@flying-sheep flying-sheep added Enhancement ✨ RFC/ Discussion For discussing proposed changes labels Jul 2, 2024
@ilan-gold
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Most interesting things would be (from Severin's conversations) would be autocorrelation (via NN graph).

Current workflow is to just use squidpy by it would be simple to add/port from squidpy.

@flying-sheep
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Severin & Tim say there’s nothing but gearys_c and morans_i, see #3291

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@flying-sheep @Intron7 @ilan-gold