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Merge pull request #381 from scverse/ori-kron-wis-patch-2
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Update run_notebook_macos.yaml
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ori-kron-wis authored Dec 19, 2024
2 parents 560ff76 + c830c52 commit 23850a5
Showing 1 changed file with 15 additions and 11 deletions.
26 changes: 15 additions & 11 deletions .github/workflows/run_notebook_macos.yaml
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@@ -1,4 +1,4 @@
name: run notebook
name: run notebook macos

on:
workflow_call:
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steps:
- uses: actions/checkout@v4

- name: Create Conda environment and install dependencies
run: |
conda init bash
source ~/.bash_profile
conda activate scvi
# - name: Create Conda environment and install dependencies
# run: |
# conda init bash
# source ~/.bash_profile
# conda activate scvi

# - name: Install dependencies
# run: |
# python -m pip install --upgrade pip wheel uv
# python -m pip install "scvi-tools[tests]"
# python -m pip install jax-metal
# python -m ipykernel install

- name: Install dependencies
- name: Install Python kernel
run: |
python -m pip install --upgrade pip wheel uv
python -m pip install "scvi-tools[tests]"
python -m pip install jax-metal
python -m ipykernel install
- name: Run notebook
run: |
python -m jupyter nbconvert --execute --inplace ${{ inputs.notebook }}
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