handle empty points in the image

scverse · Aug 3, 2023 · 43b6b3e · 43b6b3e
1 parent 267922a
commit 43b6b3e
Showing 1 changed file with 4 additions and 2 deletions.
diff --git a/src/spatialdata_plot/pl/utils.py b/src/spatialdata_plot/pl/utils.py
@@ -314,11 +314,13 @@ def get_point_bb(
 
                         # Split by Point and Polygon:
                         tmp_points = sdata.shapes[e_id][
-                            sdata.shapes[e_id]["geometry"].apply(lambda geom: geom.geom_type == "Point")
+                            sdata.shapes[e_id]["geometry"].apply(
+                                lambda geom: (geom.geom_type == "Point" and not geom.is_empty)
+                            )
                         ]
                         tmp_polygons = sdata.shapes[e_id][
                             sdata.shapes[e_id]["geometry"].apply(
-                                lambda geom: geom.geom_type in ["Polygon", "MultiPolygon"]
+                                lambda geom: (geom.geom_type in ["Polygon", "MultiPolygon"] and not geom.is_empty)
                             )
                         ]