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Snakemake pipeline for analysis and normalization of ATAC-seq data starting from fastq.gz files.

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sebastian-gregoricchio/snakeATAC

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snakeATAC


Introduction

snakeATAC is a snakemake pipeline for the analyses of ATAC-seq data, with some analyses specific to cancer samples.

Citation

If you use this pipeline, please cite:

No publication associated yet. "snakeATAC: a Snakemake Pipeline for the analyses of ATAC-seq data in Cancer samples.
XYZ, Volume X, Issue X, 2023, XYZ
DOI: XYZ



Documentation

Details on the installation and usage of snakeATAC can be found at the dedicated Wiki.




Package history and releases

A list of all releases and respective description of changes applied could be found here.

Contact

For any suggestion, bug fixing, commentary please report it in the issues/request tab of this repository.

License

This repository is under a GNU General Public License (version 3).


Contributors

contributors