reorganise variable names #161
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| # This workflow uses actions that are not certified by GitHub. | |
| # They are provided by a third-party and are governed by | |
| # separate terms of service, privacy policy, and support | |
| # documentation. | |
| # | |
| # See https://github.com/r-lib/actions/tree/master/examples#readme for | |
| # additional example workflows available for the R community. | |
| name: R | |
| on: | |
| push: | |
| branches: [ "main" ] | |
| pull_request: | |
| branches: [ "main" ] | |
| permissions: | |
| contents: read | |
| jobs: | |
| build: | |
| runs-on: ${{ matrix.config.os }} | |
| strategy: | |
| fail-fast: false | |
| matrix: | |
| r-version: ['3.6.3', '4.1.1'] | |
| config: | |
| #- {os: windows-latest, r: 'release', windows_32_or_64: '64'} | |
| - {os: macOS-latest, r: 'release'} | |
| - {os: ubuntu-20.04, r: 'release', rspm: "https://packagemanager.rstudio.com/cran/__linux__/focal/latest"} | |
| env: | |
| RGL_USE_NULL: true | |
| steps: | |
| - uses: actions/checkout@v3 | |
| - name: Set up R ${{ matrix.r-version }} | |
| uses: r-lib/actions/setup-r@v2 | |
| with: | |
| r-version: ${{ matrix.r-version }} | |
| - name: Install Dependencies (Windows) | |
| run: choco install pandoc | |
| if: matrix.config.os == 'windows-latest' | |
| - name: Install Dependencies (Linux) | |
| run: sudo apt-get install pandoc libcurl4-openssl-dev libudunits2-dev libgdal-dev | |
| if: matrix.config.os == 'ubuntu-20.04' | |
| - name: Install Dependencies (macOS) | |
| run: brew install pandoc udunits gdal | |
| if: matrix.config.os == 'macOS-latest' | |
| - name: Install R dependencies (macOs) | |
| run: | | |
| install.packages(c("remotes", "rcmdcheck", "plotly", "SEAHORS")) | |
| remotes::install_deps(dependencies = TRUE) | |
| if: matrix.config.os == 'macOS-latest' | |
| shell: Rscript {0} | |
| - name: Install R dependencies (windows, R '4.1.1') | |
| run: | | |
| install.packages(c("rlang", "remotes", "rcmdcheck", "sf", "Morpho", "stringi", "rgl"), INSTALL_opts = c("--no-multiarch")) | |
| install.packages(c("xfun", "stringi"), type="binary", INSTALL_opts = c("--no-multiarch")) | |
| remotes::install_github("dmurdoch/rgl", INSTALL_opts = c("--no-multiarch")) | |
| remotes::install_deps(dependencies = TRUE, INSTALL_opts = c("--no-multiarch")) | |
| env: | |
| GITHUB_PAT: ${{ secrets.GITHUB_TOKEN }} | |
| if: ${{ (matrix.config.os == 'windows-latest') && (matrix.r-version == '4.1.1') }} | |
| shell: Rscript {0} | |
| - name: Install R dependencies (windows, R '3.6.3') | |
| run: | | |
| install.packages(c("remotes", "rcmdcheck", "sf", "purrr", "Morpho", "plyr", "tidyr", "plotly", "testthat", "shiny", "cxhull"), INSTALL_opts = c("--no-multiarch")) | |
| install.packages(c("rlang", "Rcpp", "htmltools", "digest", "cxhull"), type="binary", INSTALL_opts = c("--no-multiarch")) | |
| remotes::install_github("dmurdoch/rgl") | |
| remotes::install_deps(dependencies = TRUE) | |
| env: | |
| GITHUB_PAT: ${{ secrets.GITHUB_TOKEN }} | |
| if: ${{ (matrix.config.os == 'windows-latest') && (matrix.r-version == '3.6.3') }} | |
| shell: Rscript {0} | |
| - name: Install R dependencies (Ubuntu) | |
| run: | | |
| install.packages(c("remotes", "curl", "pkgbuild", "rcmdcheck", "purrr", "sf", "Morpho", "cxhull", "Rvcg", "SEAHORS")) | |
| remotes::install_deps(dependencies = TRUE) | |
| if: matrix.config.os == 'ubuntu-20.04' | |
| shell: Rscript {0} | |
| - name: Check | |
| run: rcmdcheck::rcmdcheck(args = "--no-manual", error_on = "error") | |
| shell: Rscript {0} | |
| - uses: r-lib/actions/setup-r@v2 | |
| with: | |
| use-public-rspm: true | |
| - uses: r-lib/actions/setup-r-dependencies@v2 | |
| with: | |
| extra-packages: covr | |
| - name: Test coverage | |
| run: covr::codecov( | |
| quiet = FALSE, | |
| clean = FALSE, | |
| install_path = file.path(Sys.getenv("RUNNER_TEMP"), "archeoViz") | |
| ) | |
| shell: Rscript {0} | |
| - name: Show testthat output | |
| if: ${{ (always()) && ( matrix.config.os == 'ubuntu-20.04' ) }} | |
| run: | | |
| ## -------------------------------------------------------------------- | |
| find ${{ runner.temp }}/archeoViz -name 'testthat.Rout*' -exec cat '{}' \; || true | |
| shell: bash | |
| - name: Upload test results | |
| if: ${{ (failure()) && ( matrix.config.os == 'ubuntu-20.04' ) }} | |
| uses: actions/upload-artifact@v3 | |
| with: | |
| name: coverage-test-failures | |
| path: ${{ runner.temp }}/archeoViz | |